BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg911073

Length=546
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G12855.1 | Symbols:  | F-box family protein | chr1:4382160-4...   122    2e-27
  AT1G12870.1 | Symbols:  | F-box and associated interaction doma...   119    3e-26


> AT1G12855.1 | Symbols:  | F-box family protein | chr1:4382160-4383611 
FORWARD LENGTH=1452
Length=1452

 Score =  122 bits (66),  Expect = 2e-27
 Identities = 108/128 (84%), Gaps = 4/128 (3%)
 Strand=Plus/Plus

Query  323  TCTACGTTTCTAAAAGTTGCGACGGTCTTTTCTGCATCTATTCCAC-AAAATCA-GAGTT  380
            |||| | |||| |||| || ||||| |||||||||||| ||||| | |||| ||  ||  
Sbjct  590  TCTATGCTTCTGAAAGCTGTGACGGACTTTTCTGCATCCATTCC-CTAAAAACACAAG-C  647

Query  381  TATATGGGTAGTTAATCCGGCCACACGGTGGTTTAGACAACTTCCTCCGGCTAGGTTTCA  440
             ||||  |||||||| |||||||| ||||||||| |||||||||||||||||||||||||
Sbjct  648  CATATATGTAGTTAACCCGGCCACTCGGTGGTTTCGACAACTTCCTCCGGCTAGGTTTCA  707

Query  441  GATTTTGA  448
            ||||||||
Sbjct  708  GATTTTGA  715


> AT1G12870.1 | Symbols:  | F-box and associated interaction domains-containing 
protein | chr1:4387129-4389110 REVERSE LENGTH=1251
Length=1251

 Score =  119 bits (64),  Expect = 3e-26
 Identities = 325/445 (73%), Gaps = 41/445 (9%)
 Strand=Plus/Plus

Query  20   catcatcatcaCTGGTAAACGACGTTGTAGAGGAAATCTTCTTGAGACTTCCTGTGAAAT  79
            ||||||||||| |   | |||| || ||||| ||||||||||||| |||||| || ||| 
Sbjct  86   CATCATCATCATTACCAGACGATGTCGTAGAAGAAATCTTCTTGAAACTTCCGGTCAAAG  145

Query  80   CACTAATCCGACTCAAGTCTCTCTCAAAACAATGGAGATCAACGATCCAGTCTCG-TAGT  138
            | |||||  || | |||||||||||||||||||||||||| ||| || ||||| | || |
Sbjct  146  CCCTAATGAGATTTAAGTCTCTCTCAAAACAATGGAGATCGACGCTCGAGTCTTGCTA-T  204

Query  139  TT-TGCAGAGAGACACTTGAAGTTTGCCAAAAGATCCCACATGGAACACT-CAAAAGTCA  196
            || | || |||| ||||||||  | ||| |  |||| ||  |||| || | |||||||||
Sbjct  205  TTCT-CACAGAGGCACTTGAAAATAGCCGAGCGATCACATGTGGATCA-TCCAAAAGTCA  262

Query  197  TCGCCATCAATTCCAGAGAATACTTCGAAAAT-GA-ACATCGTTCGATTTGTTTTCA-TA  253
            | |  ||| | | ||  ||| |  | |  |||  | |||| |   |||| ||||| |  |
Sbjct  263  T-G--ATC-A-T-CACTGAA-AAAT-G-GAATCCAGACATAG--AGATTAGTTTT-AGGA  310

Query  254  C-ACTCTCCTTAGAGCCCA-CTCCACTTCTATCGTTTACTCTTCCCAA-ATCCCATC-CG  309
            | | |||| || ||   ||  |    || |||| | | |||||  |||  |||| || ||
Sbjct  311  CTA-TCTCTTTGGA-ATCAGTTAGTTTTTTATCCTCTGCTCTTTTCAATTTCCC-TCGCG  367

Query  310  AAATT-C-TCCAGT---TTCTACGTTTCTAAAAGTTGCGACGGTCTTTTCTGCA-TCTAT  363
              ||| | | || |    |||||| |||| |||| || |||||  ||||||||| || ||
Sbjct  368  -GATTCCAT-CA-TCCCATCTACGCTTCTGAAAGCTGTGACGGAATTTTCTGCATTC-AT  423

Query  364  TCCACAAAATCA-GAGTTTATATGGGTAGTTAATCCGGCCACACGGTGGTTTAGACAACT  422
            ||| ||||| ||  ||   ||||  ||||||||||| || ||||| |||||  |||||||
Sbjct  424  TCCCCAAAAACACAAG-ACATATATGTAGTTAATCCAGCAACACGTTGGTTCCGACAACT  482

Query  423  TCCTCCGGCTAGGTTTCAGAT-TTT  446
            ||||||||||||||||||||| |||
Sbjct  483  TCCTCCGGCTAGGTTTCAGATCTTT  507



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 26171990587


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5