BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg911093 Length=342 Score E Sequences producing significant alignments: (Bits) Value AT1G13060.2 | Symbols: PBE1 | 20S proteasome beta subunit E1 | ... 420 5e-117 AT3G26340.1 | Symbols: | N-terminal nucleophile aminohydrolase... 263 8e-70 > AT1G13060.2 | Symbols: PBE1 | 20S proteasome beta subunit E1 | chr1:4452212-4454876 FORWARD LENGTH=1280 Length=1280 Score = 420 bits (227), Expect = 5e-117 Identities = 301/333 (90%), Gaps = 20/333 (6%) Strand=Plus/Plus Query 30 GGTCCTGGACTATACTATGTTGACAACGAAGGAGGACGGCTTAAGGGAGACAGGTTTTCA 89 ||||| |||||||||||||| |||||||||||||||||||| |||||||||||||||||| Sbjct 735 GGTCCCGGACTATACTATGTCGACAACGAAGGAGGACGGCTCAAGGGAGACAGGTTTTCA 794 Query 90 GTCGGTTCTGGTTCACCATACGCTTACGGTGTACTGGACAGC-GG------T-TG--A-- 137 |||||||||||||||||||| ||||||||||| ||||||||| || | || | Sbjct 795 GTCGGTTCTGGTTCACCATATGCTTACGGTGTGCTGGACAGCGGGTACAAATATGATATG 854 Query 138 --A---G-A-AA-CTTCGGAGTTAGCGAGGAGATCAATCTACCATGCGACATTCCGTGAT 189 | | | || |||| |||||||| ||||||||||||||||||||||||||||||||| Sbjct 855 TCAGTTGAAGAAGCTTCCGAGTTAGCAAGGAGATCAATCTACCATGCGACATTCCGTGAT 914 Query 190 GGAGCCAGTGGTGGAGTTGCTAGCGTGTACCACGTTGGTCCCGAAGGATGGACGAAACTA 249 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 915 GGAGCCAGTGGTGGAGTTGCTAGCGTGTACCACGTTGGTCCCGAAGGATGGACGAAACTA 974 Query 250 TCAGGAGATGATGTTGAGGAGCTACACTACCACTACTACCCCGTGGCACCAGCTATCGCA 309 |||||||||||||||| ||||||||||||||| |||||||||||||||||||||| |||| Sbjct 975 TCAGGAGATGATGTTGGGGAGCTACACTACCATTACTACCCCGTGGCACCAGCTACCGCA 1034 Query 310 GAACAAGTGATGGAGGAAGCAACAGCCGAGTAA 342 |||||||| |||||||||||||||||||| ||| Sbjct 1035 GAACAAGTCATGGAGGAAGCAACAGCCGAATAA 1067 > AT3G26340.1 | Symbols: | N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein | chr3:9650417-9652897 REVERSE LENGTH=1113 Length=1113 Score = 263 bits (142), Expect = 8e-70 Identities = 261/314 (83%), Gaps = 26/314 (8%) Strand=Plus/Plus Query 33 CCTGGACTATACTATGTTGACAACGAAGGAGGACGGCTTAAGGGAGACAGGTTTTCAGTC 92 |||||| | ||||||||||||||||||||||||||||||||||||||||| || || ||| Sbjct 604 CCTGGATTGTACTATGTTGACAACGAAGGAGGACGGCTTAAGGGAGACAGATTCTCTGTC 663 Query 93 GGTTCTGGTTCACCATACGCTTACGGTGTACTGGACAGCGG-------TT-GA-A----- 138 ||||| ||||||||||||||||| ||||| ||||||||||| || || | Sbjct 664 GGTTCAGGTTCACCATACGCTTATGGTGTTCTGGACAGCGGATACAAATTCGATATGTCG 723 Query 139 ---G-A-AA-CTTCGGAGTTAGCGAGGAGATCAATCTACCATGCGACATTCCGTGATGGA 192 | | || | || |||||||| |||||||| ||||||||||| ||||||||||||||| Sbjct 724 GTTGAAGAAGCCTCAGAGTTAGCAAGGAGATCCATCTACCATGCTACATTCCGTGATGGA 783 Query 193 GCCAGTGGTGGAGTTGCTAGCGTGTACCACGTTGGTCC-CGAAGGATGGACGAAACTATC 251 || |||||||||||||||||||||||||||||||| || | |||||||||||||||| || Sbjct 784 GCTAGTGGTGGAGTTGCTAGCGTGTACCACGTTGGGCCGC-AAGGATGGACGAAACTCTC 842 Query 252 AGGAGATGATGTTGAG-GAGCTACACTACCACTACTACCCCGTGGCACCAG-CTATCGCA 309 ||||| || |||| | |||||||| ||||| || ||||||||||| ||| | | ||| Sbjct 843 TGGAGACGACGTTG-GCGAGCTACATTACCATTATTACCCCGTGGCTCCAATC-ACCGCG 900 Query 310 GAACAAGTGATGGA 323 ||||| |||||||| Sbjct 901 GAACATGTGATGGA 914 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 15985144182 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5