BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg911093
Length=342
Score E
Sequences producing significant alignments: (Bits) Value
AT1G13060.2 | Symbols: PBE1 | 20S proteasome beta subunit E1 | ... 420 5e-117
AT3G26340.1 | Symbols: | N-terminal nucleophile aminohydrolase... 263 8e-70
> AT1G13060.2 | Symbols: PBE1 | 20S proteasome beta subunit E1
| chr1:4452212-4454876 FORWARD LENGTH=1280
Length=1280
Score = 420 bits (227), Expect = 5e-117
Identities = 301/333 (90%), Gaps = 20/333 (6%)
Strand=Plus/Plus
Query 30 GGTCCTGGACTATACTATGTTGACAACGAAGGAGGACGGCTTAAGGGAGACAGGTTTTCA 89
||||| |||||||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 735 GGTCCCGGACTATACTATGTCGACAACGAAGGAGGACGGCTCAAGGGAGACAGGTTTTCA 794
Query 90 GTCGGTTCTGGTTCACCATACGCTTACGGTGTACTGGACAGC-GG------T-TG--A-- 137
|||||||||||||||||||| ||||||||||| ||||||||| || | || |
Sbjct 795 GTCGGTTCTGGTTCACCATATGCTTACGGTGTGCTGGACAGCGGGTACAAATATGATATG 854
Query 138 --A---G-A-AA-CTTCGGAGTTAGCGAGGAGATCAATCTACCATGCGACATTCCGTGAT 189
| | | || |||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct 855 TCAGTTGAAGAAGCTTCCGAGTTAGCAAGGAGATCAATCTACCATGCGACATTCCGTGAT 914
Query 190 GGAGCCAGTGGTGGAGTTGCTAGCGTGTACCACGTTGGTCCCGAAGGATGGACGAAACTA 249
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 915 GGAGCCAGTGGTGGAGTTGCTAGCGTGTACCACGTTGGTCCCGAAGGATGGACGAAACTA 974
Query 250 TCAGGAGATGATGTTGAGGAGCTACACTACCACTACTACCCCGTGGCACCAGCTATCGCA 309
|||||||||||||||| ||||||||||||||| |||||||||||||||||||||| ||||
Sbjct 975 TCAGGAGATGATGTTGGGGAGCTACACTACCATTACTACCCCGTGGCACCAGCTACCGCA 1034
Query 310 GAACAAGTGATGGAGGAAGCAACAGCCGAGTAA 342
|||||||| |||||||||||||||||||| |||
Sbjct 1035 GAACAAGTCATGGAGGAAGCAACAGCCGAATAA 1067
> AT3G26340.1 | Symbols: | N-terminal nucleophile aminohydrolases
(Ntn hydrolases) superfamily protein | chr3:9650417-9652897
REVERSE LENGTH=1113
Length=1113
Score = 263 bits (142), Expect = 8e-70
Identities = 261/314 (83%), Gaps = 26/314 (8%)
Strand=Plus/Plus
Query 33 CCTGGACTATACTATGTTGACAACGAAGGAGGACGGCTTAAGGGAGACAGGTTTTCAGTC 92
|||||| | ||||||||||||||||||||||||||||||||||||||||| || || |||
Sbjct 604 CCTGGATTGTACTATGTTGACAACGAAGGAGGACGGCTTAAGGGAGACAGATTCTCTGTC 663
Query 93 GGTTCTGGTTCACCATACGCTTACGGTGTACTGGACAGCGG-------TT-GA-A----- 138
||||| ||||||||||||||||| ||||| ||||||||||| || || |
Sbjct 664 GGTTCAGGTTCACCATACGCTTATGGTGTTCTGGACAGCGGATACAAATTCGATATGTCG 723
Query 139 ---G-A-AA-CTTCGGAGTTAGCGAGGAGATCAATCTACCATGCGACATTCCGTGATGGA 192
| | || | || |||||||| |||||||| ||||||||||| |||||||||||||||
Sbjct 724 GTTGAAGAAGCCTCAGAGTTAGCAAGGAGATCCATCTACCATGCTACATTCCGTGATGGA 783
Query 193 GCCAGTGGTGGAGTTGCTAGCGTGTACCACGTTGGTCC-CGAAGGATGGACGAAACTATC 251
|| |||||||||||||||||||||||||||||||| || | |||||||||||||||| ||
Sbjct 784 GCTAGTGGTGGAGTTGCTAGCGTGTACCACGTTGGGCCGC-AAGGATGGACGAAACTCTC 842
Query 252 AGGAGATGATGTTGAG-GAGCTACACTACCACTACTACCCCGTGGCACCAG-CTATCGCA 309
||||| || |||| | |||||||| ||||| || ||||||||||| ||| | | |||
Sbjct 843 TGGAGACGACGTTG-GCGAGCTACATTACCATTATTACCCCGTGGCTCCAATC-ACCGCG 900
Query 310 GAACAAGTGATGGA 323
||||| ||||||||
Sbjct 901 GAACATGTGATGGA 914
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 15985144182
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5