BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg911114

Length=564
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G59970.1 | Symbols:  | Matrixin family protein | chr1:220735...   462    1e-129


> AT1G59970.1 | Symbols:  | Matrixin family protein | chr1:22073534-22074876 
FORWARD LENGTH=1343
Length=1343

 Score =  462 bits (250),  Expect = 1e-129
 Identities = 286/304 (94%), Gaps = 0/304 (0%)
 Strand=Plus/Plus

Query  220  GTGACTCCGTTGAATTTCACGCGCTCTGAGTCTCTCCTCGGAGCTGATATAGTGATCGGA  279
            ||||||||||||||||||||||||||||||||| ||||| | || |||||||||||||||
Sbjct  626  GTGACTCCGTTGAATTTCACGCGCTCTGAGTCTATCCTCCGTGCGGATATAGTGATCGGA  685

Query  280  TTTTTCTCCGGTGAACATGGAGATGGAGAGCCGTTTGATGGAGCTATGGGGACATTAGCG  339
            |||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct  686  TTTTTCTCCGGTGAACATGGTGATGGAGAGCCGTTTGATGGAGCTATGGGAACATTAGCG  745

Query  340  CACGCTTCATCTCCTCCTACGGGGATGTTACATTTAGACGGTGATGAGGATTGGTTGATC  399
            || ||||| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  746  CATGCTTCTTCGCCTCCTACGGGGATGTTACATTTAGACGGTGATGAGGATTGGTTGATC  805

Query  400  TCTAACGGTGAAATTAGCCGTCGGGTTTTACCGGTGACGTCGGTGGTGGATCTTGAATCG  459
            ||||||||||||||||| |||||| | |||||||||||| ||||||||||||||||||||
Sbjct  806  TCTAACGGTGAAATTAGTCGTCGGATATTACCGGTGACGACGGTGGTGGATCTTGAATCG  865

Query  460  GTGGCGGTTCATGAGATCGGACATCTTTTAGGGTTAGGTCACTCGTCGGTGGAAGATGCG  519
            ||||| ||||||||||| || |||||||||||| ||||||| ||||||||||||||||||
Sbjct  866  GTGGCTGTTCATGAGATTGGTCATCTTTTAGGGCTAGGTCATTCGTCGGTGGAAGATGCG  925

Query  520  ATTA  523
            ||||
Sbjct  926  ATTA  929


 Score =  278 bits (150),  Expect = 5e-74
 Identities = 188/206 (91%), Gaps = 4/206 (2%)
 Strand=Plus/Plus

Query  19   TCGACTCTACGGCAAATCGTTAAACCGAGATGCGGGAATCCGGATACGATCGACGGAGTT  78
            |||||||| ||||||||||||||||||||||||||||||||||||  ||||||||| |||
Sbjct  392  TCGACTCTCCGGCAAATCGTTAAACCGAGATGCGGGAATCCGGATTTGATCGACGGGGTT  451

Query  79   TCGGAGATGAACGGTGG-AAGAAAGCTTCGTACGAC-GAAGTGGTACTCGTTTTTCCCCG  136
            ||||||||||||||||| |||| | || |||||||| | ||   ||||||||||||||||
Sbjct  452  TCGGAGATGAACGGTGGTAAGATA-CTCCGTACGACTG-AGAAATACTCGTTTTTCCCCG  509

Query  137  GGAAGCCACGGTGGCCGAAACGGAAACGAGATCTGACTTACGCGTTTGTGCCGCAGAACA  196
            |||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||| |
Sbjct  510  GGAAGCCACGGTGGCCGAAACGGAAACGAGATCTGACTTATGCGTTTGCGCCGCAGAATA  569

Query  197  ATTTAACCGACGATGTTAAACGCGTG  222
            ||||||| ||||| ||||||||||||
Sbjct  570  ATTTAACAGACGAGGTTAAACGCGTG  595



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 27076205233


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5