BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg911122
Length=1116
Score E
Sequences producing significant alignments: (Bits) Value
AT1G13310.1 | Symbols: | Endosomal targeting BRO1-like domain-... 1626 0.0
> AT1G13310.1 | Symbols: | Endosomal targeting BRO1-like domain-containing
protein | chr1:4561068-4563061 REVERSE LENGTH=1406
Length=1406
Score = 1626 bits (880), Expect = 0.0
Identities = 1051/1131 (93%), Gaps = 21/1131 (2%)
Strand=Plus/Plus
Query 1 ATGACGATGATGCAGTACGTAATTCCAGAACCAAAAACTAAAGAGATTGTATTCGAGAAA 60
|||||||||||||||||| ||||||||||||||||||| ||||||||| | | |||||||
Sbjct 133 ATGACGATGATGCAGTACCTAATTCCAGAACCAAAAACAAAAGAGATTTTGTACGAGAAA 192
Query 61 ACGTTGCAAGCTGCTGGTCCAGTTACTCTAGAAGAAGTTAAAGACTTAACTTCGAAGCGT 120
||||| ||||||||||||||| ||||||||| |||||||||||| |||||||| ||||||
Sbjct 193 ACGTTACAAGCTGCTGGTCCAATTACTCTAGGAGAAGTTAAAGAGTTAACTTCTAAGCGT 252
Query 121 AAAATTATCGAAGAATCAGTAAACAAAACCAGAAAAGT-A--G--TC-ACT-GATGCA-A 172
||||||||||||||||| |||||||||||||| ||||| | | || ||| | | | |
Sbjct 253 AAAATTATCGAAGAATCTGTAAACAAAACCAGCAAAGTCATTGATTCAACTACAAG-AGA 311
Query 173 -CT-ACAATAGGATTAACTTCTGCTTGTGAAAAGGATCTTCATAGACTTGGACAATACAT 230
| || | |||| |||||||||||||||| |||||||||||| ||||||| ||||| |
Sbjct 312 GATGACCAGAGGACTAACTTCTGCTTGTGAGCAGGATCTTCATAAACTTGGAGAATACCT 371
Query 231 TCCGTTACTCTTTAACTTGGTTCATTACACCGATAAGATTAAGCGGGTTTCGAATCTTAA 290
||| ||||||||||||||||| |||||||| ||||||||||| |||||||||||||||||
Sbjct 372 TCCATTACTCTTTAACTTGGTGCATTACACTGATAAGATTAAACGGGTTTCGAATCTTAA 431
Query 291 GATAAGATGGAGTAGTGGATTGATCTCTCAGACCTTGATTCAGCGTACATGTCCGAAATT 350
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 432 GATAAGATGGAGTAGTGGTTTGATCTCTCAGACCTTGATTCAGCGTACATGTCCGAAATT 491
Query 351 CTTCCAAGTCGATAACATAATGTTCGAGCTTGGAATGGTTCTTTTCGTTTACGCAGTTAA 410
|||||||||||||||||||||||||||| ||||||||||||||||| ||||||| |||||
Sbjct 492 CTTCCAAGTCGATAACATAATGTTCGAGTTTGGAATGGTTCTTTTCATTTACGCGGTTAA 551
Query 411 GCTCCGGGAGAGAGCAATGGAACTAGTATCCACAGATTCTAAAAAATCTGTAACAGTTTA 470
|||||| ||||||||||||||||||||||||||||||||||| ||| | ||| |||||||
Sbjct 552 GCTCCGCGAGAGAGCAATGGAACTAGTATCCACAGATTCTAAGAAAGCGGTAGCAGTTTA 611
Query 471 CAGAGAAGCATCTGGAGTTTTCCATCATCTGTCTCATGAGCTTCTTCCTTCATTA-AAAC 529
| |||||||||||||||||||||||||||||||||||||| ||||||||| |||| ||||
Sbjct 612 CCGAGAAGCATCTGGAGTTTTCCATCATCTGTCTCATGAGATTCTTCCTTTATTACAAAC 671
Query 530 TTTGTCTGCCTCCAGGGAAGCTTCCGGAACTAACTCCTCCCCTTTGCTCTTG-TTTGAGT 588
||||||||||||||||||||||||||||||||||||||| |||||||| || |||||||
Sbjct 672 -TTGTCTGCCTCCAGGGAAGCTTCCGGAACTAACTCCTCCGCTTTGCTC-TGCTTTGAGT 729
Query 589 CTCCTCTGTTTAGCTGAAGGTCAGGCTGTAACTATAGAGAACGCCGAAGAAAGCGGCAAA 648
|||||||||||||||||||||||||||||||||| |||||| || |||||||||||||||
Sbjct 730 CTCCTCTGTTTAGCTGAAGGTCAGGCTGTAACTACAGAGAAGGCTGAAGAAAGCGGCAAA 789
Query 649 AGTGCAAGCCTTTTGTCGAAACTGCA-TTTCGGAATTTCTCAATATCTTTCTGAAGCCTA 707
|||||||||||||||||||||||||| ||| ||||||| ||||| |||||||||||||||
Sbjct 790 AGTGCAAGCCTTTTGTCGAAACTGCACTTT-GGAATTTTTCAATTTCTTTCTGAAGCCTA 848
Query 708 TTCTCTTTTGTCATCTAGACCAA-ATGGAGAATATAAAGACCTATCGACCCGCTTTCTCG 766
| |||||||||||||||||| || | ||||||||||||||||||||||||||||||||||
Sbjct 849 TGCTCTTTTGTCATCTAGACTAACA-GGAGAATATAAAGACCTATCGACCCGCTTTCTCG 907
Query 767 AGTATGTAACAACAATGGGAGCTTTACACGAGCTAAAGAGCCAAAAACACTTAGCGGAAG 826
||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||
Sbjct 908 AGTATGTAACAACAATGGGAGCTTTACACGAACTAAAGAGCCAAAAATACTTAGCGGAAT 967
Query 827 TGCTGGAATCCGAAGATCGAGTAGGCGAAGCGGTTGGGGTTCTCCGGCGTGCCTTAGCAG 886
|||| ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 968 TGCTAGAATCCGAAGATCGAGTAGGCGATGCGGTAGGGGTTCTCCGGCGTGCCTTAGCAG 1027
Query 887 CGGCGAAGAAGAGTACGCCGTCGAAAGATGACAAGTGGATATCGATATTCAAGAAAGAGA 946
|||||||||||||||||||||| |||||||||||||||||| | ||||||||||| ||||
Sbjct 1028 CGGCGAAGAAGAGTACGCCGTCCAAAGATGACAAGTGGATAGCAATATTCAAGAAGGAGA 1087
Query 947 GAGAGGAAGTAGCTAAAAACATGGCTAAGTATGAGAAGCTAAACGATTCTATGATGTTAC 1006
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1088 GAGAGGATGTAGCTAAAAACATGGCTAAGTATGAGAAGCTAAACGATTCTATGATGTTAC 1147
Query 1007 AGAAGATTCCAATTGATAGAGAGATACCTTTTCCAAAAGGTGCGAAGATTGTTAATCTCA 1066
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1148 AGAAGATTCCAATTGATAGAGAGATACCTTTTCCAAAAGGTGAGAAGATTGTTAATCTCA 1207
Query 1067 TTCCTTATACTCCCACAAG-GTTGGTACGAGAACTTCGATTTAAGTCTTAG 1116
||||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 1208 TTCCTTATACTCCCACAAGAGT-GGTACGAGAACTTCGATTTAAGTCTTAG 1257
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54718594050
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5