BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg911137

Length=1143
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G12870.1 | Symbols:  | F-box and associated interaction doma...   198    9e-50


> AT1G12870.1 | Symbols:  | F-box and associated interaction domains-containing 
protein | chr1:4387129-4389110 REVERSE LENGTH=1251
Length=1251

 Score =  198 bits (107),  Expect = 9e-50
 Identities = 288/371 (78%), Gaps = 29/371 (8%)
 Strand=Plus/Plus

Query  548  TTACCAAGTGCGAGGTTTTCGATTTTAGGGCAAACGCTTGGAGATACTTGACTTGCACT-  606
            |||| |||||||||||||| ||||||| ||||||||||||||||||||||||||||| | 
Sbjct  629  TTACTAAGTGCGAGGTTTTTGATTTTAAGGCAAACGCTTGGAGATACTTGACTTGCA-TA  687

Query  607  CCAAGGTACCGAATATTTAACGACCAAACCCCAGCATCCGCAAACGG-ATTAGTTTATTG  665
            ||||| || ||||||| | | |||||||  |||||||| |||||||| |    |||||||
Sbjct  688  CCAAGTTATCGAATATATCATGACCAAAAGCCAGCATCTGCAAACGGGACGC-TTTATTG  746

Query  666  GCTCACGGAA-CGATACAATGGTGAAACCAAAGTTATAGTTTTTGATCTTCAAACTGAAA  724
            | |||||||| | ||| ||||  |||| |||||| |||| ||| ||| |||| || ||||
Sbjct  747  GTTCACGGAAAC-ATATAATGCAGAAATCAAAGTAATAGCTTTGGATATTCACACCGAAA  805

Query  725  CT-TTTCGATTGCTACCTAAGAAT--CCAGCT-GCTAGTTCACATCC-AGACCATATCGA  779
             | ||||| ||||| ||||||  |  ||   | ||||||||| | || || |||||| ||
Sbjct  806  -TATTTCGGTTGCTGCCTAAGCCTAGCCTTATTGCTAGTTCAGAGCCTAG-CCATATTGA  863

Query  780  CCTGTGCATTTTGGATAATAGACTCTGTATGT-CGAAG-AGAAAGCGCGG-TAC-AA--T  833
            | |||||||| | ||||||||  | || |||| ||||  |||| | | || ||  ||  |
Sbjct  864  CATGTGCATTATAGATAATAGTTTGTGCATGTACGAAACAGAA-G-G-GGATAAGAAGAT  920

Query  834  GATCCAAAAGATTTGGAGCTTGCAAGTATCATTAGAGGA-GACAAGG-ACAAAGATTTAT  891
             |||||| |||||||||| ||| ||  |||||  || || | || || | || |||||||
Sbjct  921  CATCCAAGAGATTTGGAGGTTG-AA--ATCATCGGAAGACG-CATGGGAGAA-GATTTAT  975

Query  892  ACTATAGATCT  902
            || ||| ||||
Sbjct  976  ACCATAAATCT  986



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 56074008765


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5