BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg911148

Length=312
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G13605.1 | Symbols:  | Encodes a defensin-like (DEFL) family...   394    3e-109


> AT1G13605.1 | Symbols:  | Encodes a defensin-like (DEFL) family 
protein. | chr1:4658538-4659106 FORWARD LENGTH=473
Length=473

 Score =  394 bits (213),  Expect = 3e-109
 Identities = 282/315 (90%), Gaps = 6/315 (2%)
 Strand=Plus/Plus

Query  1    ATGGCGAGACTTATCTTTCATTTTGTATTCGCTCTTATTGTTGCATATTATTTATTGTCG  60
            ||||||||||||||||||||||||||||| ||||||||  |||||  |||||||||||||
Sbjct  66   ATGGCGAGACTTATCTTTCATTTTGTATTTGCTCTTATCCTTGCAGCTTATTTATTGTCG  125

Query  61   GTATCTGATGCGATA-GTAAGAGAATGGAAAGAACCATGCTTTTGTCCTTCCACAAATCC  119
            ||| |||||||||||  | |||| |||| ||||||| |||||||||||||||| ||||||
Sbjct  126  GTAACTGATGCGATACCT-AGAGGATGGCAAGAACCGTGCTTTTGTCCTTCCAAAAATCC  184

Query  120  TTACTGCAACTGTGGCGATGATCTTCAAGTTCCTACTCCTTCAGTGATTGGTCCTAACCC  179
            ||||||| ||||||||||||||||||||||||||||| ||||||||||| ||||||| ||
Sbjct  185  TTACTGCGACTGTGGCGATGATCTTCAAGTTCCTACTACTTCAGTGATTAGTCCTAAACC  244

Query  180  TAAAATCGAAAAGTGTGCGCGTTGC-AATGGAAACTCTCAATGTAACAAAGTTTGTCCGG  238
            || ||| ||  |||||||||||||| ||  ||||||||||||| ||||||||||||||||
Sbjct  245  TATAATTGAGCAGTGTGCGCGTTGCGAA-AGAAACTCTCAATGCAACAAAGTTTGTCCGG  303

Query  239  CAACGTGCAAATACAAAGTCTGTATATACAATCCAACATGTGATTTGCA-TACATGTTAT  297
            |||||||||||||||||||||||||||  |||| ||||||||| || || ||||||| ||
Sbjct  304  CAACGTGCAAATACAAAGTCTGTATATTTAATCGAACATGTGAGTT-CAGTACATGTCAT  362

Query  298  TGCTATATATGTTGA  312
            ||||||| |||||||
Sbjct  363  TGCTATAGATGTTGA  377



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 14477111712


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5