BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg911153
Length=2415
Score E
Sequences producing significant alignments: (Bits) Value
AT1G13630.1 | Symbols: | Tetratricopeptide repeat (TPR)-like s... 3290 0.0
> AT1G13630.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr1:4669784-4672826 REVERSE LENGTH=2421
Length=2421
Score = 3290 bits (1781), Expect = 0.0
Identities = 2092/2240 (93%), Gaps = 30/2240 (1%)
Strand=Plus/Plus
Query 40 GATGAGTCATCACCCACAACCAATTTCACTTCCGATCACAGAGACTTCTACCAAGAGATT 99
|||||||||| |||||||||||||| ||||||||||||||||| |||||| ||||||||
Sbjct 7 GATGAGTCATTACCCACAACCAATTCCACTTCCGATCACAGAGGCTTCTATAAAGAGATT 66
Query 100 CTCTTTGGGATGAAGAAGATTGGTTTCCGTGAGTTTCTTCACGGGCATCACTTTCGAGGC 159
||||||||||||||||||||||| ||||| ||||||||||||||| |||||||||||||
Sbjct 67 CTCTTTGGGATGAAGAAGATTGGGTTCCGCGAGTTTCTTCACGGGTATCACTTTCGAGGT 126
Query 160 TTGGTTTCGGAATTGAGACA-GATACACGTCGAAGATATCATGGCTGAATTAATGTCTGA 218
||||||||||||||||| || | | || |||||||| ||||||| |||||| ||||||||
Sbjct 127 TTGGTTTCGGAATTGAGGCATG-TTCATGTCGAAGAAATCATGGATGAATTGATGTCTGA 185
Query 219 AAGCTCAGATCTTTCGGTTTGGTTTTTCAAAGAGCTGAGAGATATTTATGGGTTTCGTCA 278
||||||||||||||| ||||||||||||||||||||||||||||| |||| |||||||||
Sbjct 186 AAGCTCAGATCTTTCTGTTTGGTTTTTCAAAGAGCTGAGAGATATCTATGCGTTTCGTCA 245
Query 279 TTCCAGATTTTCCACATTGTTGGTTTCACATATTTTCGCAGGTCAAAGACGTTTCAAAGA 338
||| || |||||||||||||||||||||||| |||| || ||||||||||||||||||||
Sbjct 246 TTCGAGTTTTTCCACATTGTTGGTTTCACATGTTTTAGCTGGTCAAAGACGTTTCAAAGA 305
Query 339 GCTTCAAGTGATTCTGGAACAATTCCTCCAAGAAGAAGGCAAGCTTTGTGAACTTCTCTC 398
|||||||||||||||||||||||| || | ||||| | || | | |
Sbjct 306 GCTTCAAGTGATTCTGGAACAATTGCTTC---AAGAA-G-AA-----G-G---------C 345
Query 399 TAATAGCTTCAGAAAGTGGGAGTCTACGGGATTAGTTTGGGATATGTTGTTGTTTCTTTC 458
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 346 ----ACCTTCAGAAAGTGGGAGTCTACGGGATTAGTTTGGGATATGTTGTTGTTTCTTTC 401
Query 459 ATCAAGATTGAGAATGGTTGATGATTCTCTTTATATCTTGAAAAAGATGAAGGATCGGAA 518
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 402 ATCAAGATTGAGAATGGTTGATGATTCTCTTTATATCTTGAAAAAGATGAAGGATCAGAA 461
Query 519 CTTGAATGTGTCGACACAGTCGTACAACTCCGTTTTGTATAATTTTAGAGAGACGGATAA 578
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 462 CTTGAATGTGTCGACACAGTCGTACAACTCCGTTTTGTATCATTTTAGAGAGACGGATAA 521
Query 579 GATGTGGGATGTGTACAAGGAAATCAAGGATAAGAACGAGCACACGTACTCAACAGTTGT 638
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 522 GATGTGGGATGTGTACAAGGAAATCAAGGATAAGAACGAGCACACGTACTCAACAGTTGT 581
Query 639 AGATGGTTTGTGTAGGCAACAAAAGCTAGAAGATGCAGTTTTGTTCCTCCGAACTTCAGA 698
|||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 582 AGATGGTTTGTGTAGGCAACAAAAGCTAGAGGATGCAGTTTTGTTCCTTCGAACTTCAGA 641
Query 699 GTGGAAGGATATTGGCCCCTCTGTAGTTTCTTTTAATAGTATAATGTCAAGTTACTGTAA 758
||||||||||||||| ||||||||||||||||| ||||||||||||||| ||||||||||
Sbjct 642 GTGGAAGGATATTGGTCCCTCTGTAGTTTCTTTCAATAGTATAATGTCAGGTTACTGTAA 701
Query 759 ATTGGGTTTTGTAGATATGGCGAAGTCGTTTTTCTGTACAGTTTTGAAATGTGGATTGGT 818
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 702 ATTGGGTTTTGTAGATATGGCGAAGTCGTTTTTCTGTACAGTTTTGAAATGTGGGTTGGT 761
Query 819 TCCTAGTGTATATAGTCACAATATACTCATCAACGGACTCTGTCTAGTTGGTTCTATCGC 878
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 762 TCCTAGTGTATATAGTCACAATATACTCATCAATGGACTCTGTCTAGTTGGTTCTATCGC 821
Query 879 AGAAGCTTTAGAGTTGGCTAGTGATATGAATAAGCATGGAGTGGAACCTGATTCTGTGAC 938
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 822 AGAAGCTTTAGAGTTGGCTAGTGACATGAATAAGCATGGAGTGGAACCTGATTCTGTGAC 881
Query 939 ATACAATATTCTTGTGAAAGGGTTTCATCTTCTCGGTATGATCAGTGGGGCTGGGGAGGT 998
|||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 882 ATACAATATTCTTGCGAAAGGGTTTCATCTTCTCGGTATGATCAGTGGGGCTTGGGAGGT 941
Query 999 TATTCAAGATATGTTGGATAAAGGTTTGAGTCCTGATGTTATTACATACACAATATTACT 1058
|||| |||||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 942 AATTCGAGATATGTTGGATAAAGGATTGAGTCCTGATGTTATTACATACACAATTTTACT 1001
Query 1059 ATGTGGGCAATGTCAGTTAGGAAATATTGACATGGGTTTAATATTGCTGAAGGATATGTT 1118
|||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1002 ATGTGGACAATGTCAGTTAGGAAATATTGACATGGGTTTAGTATTGCTGAAGGATATGTT 1061
Query 1119 GTCGAGGGGATTTGAGTTAAAAAGTATCATCCCCTACAGTGTAATGCTCAGTGGTTTATG 1178
||||||||||||||||||||| ||||||||||| | ||||||||||||||||||||||||
Sbjct 1062 GTCGAGGGGATTTGAGTTAAACAGTATCATCCCATGCAGTGTAATGCTCAGTGGTTTATG 1121
Query 1179 TAAAACAGGACGAGTAGATGAAGCTTTGTCGTTATTCTATGATTTGGAAGCCTATGGTCT 1238
|||||||||| || ||||||||||||||||||||||| || | || ||||| |||||||
Sbjct 1122 TAAAACAGGAAGAATAGATGAAGCTTTGTCGTTATTCAATCAAATGAAAGCCGATGGTCT 1181
Query 1239 GACCCCTGATCTCGTGGCATATTCTATTGTGATTCATGGCCTGTGCAAGTTAGGAAAATT 1298
|| ||||||||| || |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1182 GAGCCCTGATCTTGTAGCATATTCTATTGTGATTCATGGCCTCTGCAAGTTAGGAAAATT 1241
Query 1299 TGATATGGCTGTTAGGCTTTTCGACGAGATGTGTTACAAAAGAATTCTTCCGAATTCTAG 1358
|||||||||| || |||||| ||||||||||||| |||||||||||||||||||||| ||
Sbjct 1242 TGATATGGCTCTTTGGCTTTACGACGAGATGTGTGACAAAAGAATTCTTCCGAATTCGAG 1301
Query 1359 GACACTTGGTGCTATTATGCTCGGTTTATGTCAGAAAGGGATGTTACTTGAGGCAAGATC 1418
||| | ||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1302 GACTCATGGTGCTCTTTTGCTCGGTTTATGTCAGAAAGGGATGTTACTTGAGGCAAGATC 1361
Query 1419 GCTTCTGGATTCTCTGATTTCAAGTGGAGACACACTGGATATTATTCTGTACAATATCGT 1478
|||| ||||||||||||||||||||||||| |||||||||||| ||||||||||||||||
Sbjct 1362 GCTTTTGGATTCTCTGATTTCAAGTGGAGAGACACTGGATATTGTTCTGTACAATATCGT 1421
Query 1479 AATTGACGGGTATGCAAAGTCTGGTTGCATTGAGGAGGCGTTAGAGTTATTCAAGGTAG- 1537
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1422 AATTGACGGGTATGCAAAGTCTGGTTGCATTGAGGAGGCGTTAGAGTTATTCAAAGTAGT 1481
Query 1538 CTATTGAGAGTGGGATAACTCCTAACGTTGCAACTTTTAATTCTTTGATTTACGGGTATT 1597
| ||||||| |||||||||||||| |||||||||||||||||||||||| ||||||||||
Sbjct 1482 C-ATTGAGACTGGGATAACTCCTAGCGTTGCAACTTTTAATTCTTTGATATACGGGTATT 1540
Query 1598 GCAAAACCCAGAATATAGCTGAGGCTAGAAAAATCTTGGATGTCATCAAGTTATATGGAT 1657
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1541 GCAAAACCCAGAATATAGCTGAGGCTAGAAAAATCTTAGATGTCATCAAGTTATATGGAT 1600
Query 1658 TGGTTCCAAGTGTTGTGAGTTATACAACTCTGATGGATGCGTACGCAAATTGTGGAAGTA 1717
||| |||||||||||||||||||||||||||||||||||| || ||||||||||||| ||
Sbjct 1601 TGGCTCCAAGTGTTGTGAGTTATACAACTCTGATGGATGCATATGCAAATTGTGGAAATA 1660
Query 1718 TCAAAAGCATAGAAGAATTGCGCAGGGAAATGAAAGCAGAAGGAATCCCACCAACCAATG 1777
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1661 CCAAAAGCATAGATGAATTGCGCAGGGAAATGAAAGCAGAAGGAATCCCACCAACCAATG 1720
Query 1778 TCACGTACTCAGTGATTTTTAAAGGACTTTGCAGAGGCTGGAAACTTGAAAATTGCAACC 1837
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1721 TCACGTACTCAGTGATTTTTAAAGGACTTTGCAGAGGCTGGAAACATGAAAATTGCAACC 1780
Query 1838 AGGTACTCAGGGGAAGGATACTCGAAAAATTCAACCATGTACTCAGGGACATGGAATCTG 1897
| |||||||||| ||||||| ||||||||| ||| || | ||||||||||||||||||||
Sbjct 1781 ATGTACTCAGGGAAAGGATATTCGAAAAATGCAAGCAGGGACTCAGGGACATGGAATCTG 1840
Query 1898 AAGGTATAACTCCAGATCAGATCACATACAATACAATTATTCAGTATCTATGCAGAGTTA 1957
|||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1841 AAGGTATACCTCCAGATCAGATCACATATAATACAATTATTCAGTATCTATGCAGAGTTA 1900
Query 1958 AACATTTATCCAGAGCATTTGAGTTATTTaaaaa-aaTGAAATCTCAAAATCTTGATCCT 2016
|||||||||| ||||||||| ||| | | ||| ||||||||||| |||||||||| ||
Sbjct 1901 AACATTTATCTGGAGCATTTGTGTT-TCTCGAAATAATGAAATCTCGAAATCTTGATGCT 1959
Query 2017 ACGTCTGCTACTTATAATATTCTAATCGACAGCCTTTGTATCTACGGTTGCATAAGGAAA 2076
| |||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||
Sbjct 1960 TCATCTGCTACTTATAATATTCTAATCGACAGCCTTTGTGTCTACGGTTACATAAGGAAA 2019
Query 2077 GCTGACAGGTTTCTCTATTCGCTCCAGAAGCGGAATGTTAGTTTGTCCAAATTTGCTTAT 2136
|||||||| ||| |||||||||||||| ||| ||||||||||||||||||||||||||||
Sbjct 2020 GCTGACAGTTTTATCTATTCGCTCCAGGAGCAGAATGTTAGTTTGTCCAAATTTGCTTAT 2079
Query 2137 ACCACAGTGATCAAGGCACATTGTGTAAAAGGTGACCCTGAAATGGCAGTGATTCTATTT 2196
|||||| |||||||||||||||||||||| |||||||||||||||||||||| ||||||
Sbjct 2080 ACCACACTGATCAAGGCACATTGTGTAAAGGGTGACCCTGAAATGGCAGTGAAGCTATTT 2139
Query 2197 AATCAGCTGCTGGACAGAGGATTCAATGTTTCCATCAGGGACTATAGCGCGGTCATCAAT 2256
|||| |||||| |||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 2140 CATCAACTGCTGCACAGAGGATTCAATGTTTCCATTAGGGACTATAGCGCGGTGATCAAC 2199
Query 2257 CGTTTGTGTAGGAGACATTT 2276
||||||||||||||||||||
Sbjct 2200 CGTTTGTGTAGGAGACATTT 2219
Score = 89.8 bits (48), Expect = 1e-16
Identities = 50/51 (98%), Gaps = 0/51 (0%)
Strand=Plus/Plus
Query 2365 GATGAATTGCTTTCCTGGACAATCAAATGGGGTTTGTTGCCTGATCAGTAA 2415
||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 2220 GATGAATTGCTTTCCTGGACAATCAAATGGGGTTTGTTGCCTGATTAGTAA 2270
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 119929102005
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5