BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg911165
Length=1842
Score E
Sequences producing significant alignments: (Bits) Value
AT1G13750.1 | Symbols: | Purple acid phosphatases superfamily ... 2898 0.0
> AT1G13750.1 | Symbols: | Purple acid phosphatases superfamily
protein | chr1:4715394-4718235 REVERSE LENGTH=2082
Length=2082
Score = 2898 bits (1569), Expect = 0.0
Identities = 1753/1844 (95%), Gaps = 4/1844 (0%)
Strand=Plus/Plus
Query 1 ATGAGAGAATCGTTAGTTGCAATCTTGGTGACTGTTGTATCAGTTCTTGGAGCAATTCAA 60
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 145 ATGAGAGAATCGTTAGTTGCAATCTTGGTGACTGTTATATCAGTTCTTGGAGCAATTCAC 204
Query 61 GAAGTGAAATCTCATAAAGACCAACCTTTATCAGGAATTGCTATCCATAAGATTACATTT 120
|||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 205 CAAGTGAAATCTCATGAAGACCAACCTTTATCAGGAATTGCTGTCCATAAGATTACATTT 264
Query 121 GATCTCAATGAAAAAGCTTATGTCAAAGCCTCTCCAACAGTTCTTGGATCTAATGGTCAA 180
| ||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 265 GGTCTCAATGAAAAAGCTTATGTCAAAGCATCTCCAACAGTTCTTGGATCTAACGGTCAA 324
Query 181 CATAGTGAATTGGTGTTGGTCCAATATAGTTCTCCAAAACCATCTGATGATGATTGGATT 240
||||||||||| || |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 325 CATAGTGAATTAGTATTGGTCCAATATAGTTCTCCGAAACCATCTGATGATGATTGGATT 384
Query 241 GGAGTGTTTTCTCCTGCAGATTTCAATGCTTCGACTTGTCCAGGAGATAACAAAATGGTC 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 385 GGAGTGTTTTCTCCTGCAGATTTCAATGCTTCGACTTGTCCAGGAGATAACAAAATGGTC 444
Query 301 CAACCACCTCTACTTTGTTCCGCGCCTGTCAAGTTTCAATATGCAAACTTCAGTAATCCA 360
|||||||||| ||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 445 CAACCACCTCGACTTTGTTCAGCGCCTGTCAAGTTTCAATATGCAAACTTTAGTAATCCA 504
Query 361 AGATACACCAATACTGGAACTGGTTCCTTGAAGCTTCAACTGATCAACCAAAGATCCGAT 420
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 505 AGATACACCAATACTGGAACTGGTTCCTTGAAGCTTCAACTGATTAACCAAAGATCGGAT 564
Query 421 TTCTCCTTCGCGCTCTTTTCTGGCGGTTTGTTGAATCCAAAGCTTGTGGCAATCTCAAAC 480
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 565 TTCTCCTTCGCGCTCTTTTCTGGCGGTTTGTTGAATCCCAAGCTTGTGGCAATCTCAAAC 624
Query 481 AAAGTAGCTTTTGAGAACCCAAATGCACCAGTTTATCCGCGATTGGCGCTAGGCAAAGAA 540
||||||||||||||||| ||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 625 AAAGTAGCTTTTGAGAATCCAAACGCACCAGTTTATCCGCGGTTGGCGCTAGGCAAAGAA 684
Query 541 TGGGATGAAATGACGGTGACATGGACTAGTGGTTATGGACTCAACTTAGCTGAACCTATT 600
|||||||||||||| |||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 685 TGGGATGAAATGACAGTGACATGGACTAGTGGTTATGGACTCAACCTAGCTGAACCTGTT 744
Query 601 GTTGAGTGGGGTATTAAAGGAGGAGAAC-TGAAACTCTCACCTGCTGGAACATTGACCTT 659
||||||||||| ||||||||||||||| | ||||| |||||||||||||||||||||||
Sbjct 745 GTTGAGTGGGGCGTTAAAGGAGGAGAACGT-AAACTGTCACCTGCTGGAACATTGACCTT 803
Query 660 CGGGCGTAACAGCATGTGCGGTGCTCCTGCAAGGACGGTTGGATGGCGTGATCCGGGATA 719
|| ||||||||||||||||||||||||||||||||| || |||||||||||||| |||||
Sbjct 804 CGCGCGTAACAGCATGTGCGGTGCTCCTGCAAGGACCGTGGGATGGCGTGATCCCGGATA 863
Query 720 CATACACACAGCTTTTCTCAAAGAATTATGGCCAAATTCCAAGTATACCTACAGAGTTGG 779
|||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 864 CATACACACAGCTTTTCTCAAAGAGTTATGGCCAAACTCCAAGTATACCTACAGAGTTGG 923
Query 780 GCATAGATTGTCCAATGGTGCATTGATCTGGAGTAAAGAGTATCACTTCAAATCTTCTCC 839
|||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 924 TCATAGATTGTCCAATGGTGCATTGATCTGGAGTAAAGAATATCAATTCAAATCTTCTCC 983
Query 840 TTTCCCGGGCCAAAGCTCTCTCCAACAAGTTGTTATCTTTGGAGACATGGGAAAGGCGGA 899
||||||||| |||| |||| ||||||||||||| ||||||||||||||||||||||| ||
Sbjct 984 TTTCCCGGGACAAAACTCTGTCCAACAAGTTGTAATCTTTGGAGACATGGGAAAGGCAGA 1043
Query 900 GGTCGATGGATCAAACGAGTACAATGATTTCCAACGCGCTTCTCTCAACACTACAAAGCA 959
|||||||| |||| |||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1044 AGTCGATGGCTCAAGCGAGTACAATGATTTCCAACGCGCTTCTCTCAACACCACAAAGCA 1103
Query 960 ACTTATTAAAGATCTGAAGAAGACTGATGCAGTTTTCCACATTGGAGATATCTGTTATGC 1019
||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1104 ACTTATTAAAGATCTAAAGAAGACTGATGCAGTTTTCCACATTGGAGATATTTGTTATGC 1163
Query 1020 AAATGGATACCTTTCTCAATGGGACCAATTCATAGCACAGATTGAGCCAATTGCTTCCAC 1079
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1164 AAATGGATACCTTTCTCAATGGGACCAATTCATAGCACAGATTGAGCCTATTGCTTCCAC 1223
Query 1080 TGTCCCATACATGATTGCAAGCGGAAACCATGAGCGTGACTGGCCTAACTCAGGATCGTT 1139
||| ||||| |||||||||||||||||||||||||||| |||||| ||||||||||||||
Sbjct 1224 TGTTCCATATATGATTGCAAGCGGAAACCATGAGCGTGTCTGGCCCAACTCAGGATCGTT 1283
Query 1140 GTACCAGGGTTTAGACTCTGGAGGAGAATGTGGTGTACCAGCTGAGACAATGTTCTATGT 1199
||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1284 TTACGAGGGTTTAGACTCTGGAGGAGAATGTGGTGTTCCAGCTGAGACAATGTTCTATGT 1343
Query 1200 TCCTGCTCAAAACAGAGCCAAGGTCTGGTACTCGAGTGACTATGGGATGTTTAGGTTCTG 1259
|||||||||||||||||| ||||||||||||||||||||||| || ||||||||||||||
Sbjct 1344 TCCTGCTCAAAACAGAGCTAAGGTCTGGTACTCGAGTGACTACGGAATGTTTAGGTTCTG 1403
Query 1260 TGTGGCTGATACAGAACATGACTGGAGAGAAGGAACAGAGCAATACAACTTCATTGAACA 1319
||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1404 TGTGGCTGACACAGAACATGACTGGAGAGAAGGAACAGAGCAATACAATTTCATTGAACA 1463
Query 1320 CTGCTTAGCATCAGTCGACAGGAAAAAGCAGCCGTGGCTGATATTCCTCGCTCACCGTGT 1379
|||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||
Sbjct 1464 CTGCTTAGCATCAGTCGACAGGCAAAAGCAGCCATGGCTGATATTCCTCGCTCACCGTGT 1523
Query 1380 TCTCGGTTATTCTTCCACGTCGTTTTATGCGGAAGAAGGCTCTTTTGCTGAACCAATTGG 1439
|||||||||||||||||| | |||||||||||||||||||||||||| ||||| || ||
Sbjct 1524 TCTCGGTTATTCTTCCACATATTTTTATGCGGAAGAAGGCTCTTTTGCCGAACCTATGGG 1583
Query 1440 AAGAGACAGTCTTCAAAAGCTATGGCAGAAGTACAAAGTCGACATTGC-AGTCTTTGGCC 1498
|||||| |||||||| ||| |||||||||||||||||||||||||||| | ||| |||||
Sbjct 1584 AAGAGAAAGTCTTCAGAAGTTATGGCAGAAGTACAAAGTCGACATTGCTA-TCTATGGCC 1642
Query 1499 ATGCACATAACTACGAGAGAACATGCCCGGTTTACCAGAGTGTATGCACGAGTCATGAGA 1558
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1643 ATGCACATAACTACGAGAGAACATGCCCGGTTTACCAGAGTGTATGCACGAGTCATGAGA 1702
Query 1559 AGAGTAACTACAAAGGTCCATTGAATGGAACCATCCACGTTGTTGCTGGGGGTGGAGGAG 1618
||||||||||||||| |||||||||||||||||| ||| |||||||||| ||||||||||
Sbjct 1703 AGAGTAACTACAAAGCTCCATTGAATGGAACCATTCACATTGTTGCTGGAGGTGGAGGAG 1762
Query 1619 CTGGTCTTGCTGAATTCTCTGATCTTCAACCGAATTGGAGTCTGTTTAGAGACTACGATT 1678
|||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct 1763 CTGGTCTTGCTGAATTCTCTGATCTTCAACCGAATTGGAGTCTGTTCAGAGACTATGATT 1822
Query 1679 ACGGATTCGTTAAACTTACAGCTTTTGATCACTCTAATCTTCTGTTTGAGTACAAGAAGA 1738
|||||||| ||||||||||||| |||||||||| || ||||||||||||||||||||||
Sbjct 1823 ACGGATTCCTTAAACTTACAGCCATTGATCACTCAAACCTTCTGTTTGAGTACAAGAAGA 1882
Query 1739 GCAGCGACGGACGAGTCCATGATTCTTTCACGATATCTAGAGATTACAGAGACATCTTGG 1798
|||| |||||||||||||| ||||||||||||||||| | ||||||||||||||||||||
Sbjct 1883 GCAGTGACGGACGAGTCCACGATTCTTTCACGATATCAAAAGATTACAGAGACATCTTGG 1942
Query 1799 CTTGTGCGGTTGATAGTTGTCCTGCAACAACACTTGCTTCATAA 1842
|||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1943 CTTGTGCGGTTGATAGTTGTCCTGCAACTACACTTGCTTCATAA 1986
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 91164189720
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5