BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg911166

Length=276
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G13755.1 | Symbols:  | Defensin-like (DEFL) family protein |...   303    4e-82
  AT2G25255.1 | Symbols:  | Encodes a defensin-like (DEFL) family...  87.9    4e-17


> AT1G13755.1 | Symbols:  | Defensin-like (DEFL) family protein 
| chr1:4718673-4719354 REVERSE LENGTH=564
Length=564

 Score =  303 bits (164),  Expect = 4e-82
 Identities = 215/239 (90%), Gaps = 6/239 (3%)
 Strand=Plus/Plus

Query  1    ATGAAGATCGTTTGCTTTAAAA-TGTTGTTATTGGTTTCTCTACTTGTCGCCGTCGTCCA  59
            |||||||||| || | |||||| ||||||||||||||||||||||| | |||||   |||
Sbjct  117  ATGAAGATCGCTT-CCTTAAAATTGTTGTTATTGGTTTCTCTACTTTTTGCCGTAACCCA  175

Query  60   AAATGGACA-TACCATTCAAAATAGTGAAAGTTCTGTCAACCAAAACTCTTGTATGCCAA  118
            ||||||| | || ||||||||| ||||||| |||||||||||||||||| |||||||| |
Sbjct  176  AAATGGA-ATTAGCATTCAAAACAGTGAAACTTCTGTCAACCAAAACTCATGTATGCCGA  234

Query  119  ATGAACCAAGATGCAGCGGCTGTCCAGGTGGTGGTAGTGGTGGCTT-TCGTGGACCACCA  177
            ||||||||||||||| ||| ||||||||||||||||||||||| || |||||||||||||
Sbjct  235  ATGAACCAAGATGCACCGGTTGTCCAGGTGGTGGTAGTGGTGG-TTATCGTGGACCACCA  293

Query  178  CCTCCATGTTGTAAGAAGGATAGTGATTGTAAAGAGCATTGTCCAGAGGTAGGTTATTG  236
            ||||||||||||||||| |||||||||||||||| |||||| ||||||| |||||||||
Sbjct  294  CCTCCATGTTGTAAGAATGATAGTGATTGTAAAGCGCATTGCCCAGAGGGAGGTTATTG  352


> AT2G25255.1 | Symbols:  | Encodes a defensin-like (DEFL) family 
protein. | chr2:10755067-10755327 REVERSE LENGTH=261
Length=261

 Score = 87.9 bits (47),  Expect = 4e-17
 Identities = 74/86 (86%), Gaps = 6/86 (7%)
 Strand=Plus/Plus

Query  151  GGTAGTGGTGGCTT-TCGTGGACCACCACCTCC-ATGTTGTAAGAAGGATAGTGATTGTA  208
            |||||| |||| ||  |||||  |||||||||| ||||||||||||||||||||||||||
Sbjct  142  GGTAGT-GTGG-TTACCGTGGTTCACCACCTCCAATGTTGTAAGAAGGATAGTGATTGTA  199

Query  209  AAGAGCA-TTGTCCAGAGGTAGGTTA  233
            ||| ||| || ||||| || ||||||
Sbjct  200  AAGTGCAGTT-TCCAGGGGGAGGTTA  224



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 12667472748


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5