BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg911175

Length=651
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G03495.1 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) fami...  63.9    2e-09
  AT5G53700.1 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) fami...  56.5    3e-07


> AT5G03495.1 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) family 
protein | chr5:873331-875251 REVERSE LENGTH=1290
Length=1290

 Score = 63.9 bits (34),  Expect = 2e-09
 Identities = 71/88 (81%), Gaps = 6/88 (7%)
 Strand=Plus/Plus

Query  53   GCGTTGA-GGGATATGACACTTCG-GTTCATGCGTA-TGATCTCAAGCTTGCGTTGAGAA  109
            ||||| | |||||||||||||| | |||| |  | | |||| || || | || ||| |  
Sbjct  618  GCGTT-ACGGGATATGACACTT-GTGTTCCTAAG-ATTGATATCCAGATGGCCTTGTGTG  674

Query  110  AACATTTCTCTTCATGTGGAGAGGTCAC  137
            ||||||||||||||||||||||||||||
Sbjct  675  AACATTTCTCTTCATGTGGAGAGGTCAC  702


> AT5G53700.1 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) family 
protein | chr5:21801143-21802787 FORWARD LENGTH=1075
Length=1075

 Score = 56.5 bits (30),  Expect = 3e-07
 Identities = 44/51 (86%), Gaps = 0/51 (0%)
 Strand=Plus/Plus

Query  87   TGATCTCAAGCTTGCGTTGAGAAAACATTTCTCTTCATGTGGAGAGGTCAC  137
            ||||||| || | | | || | |||||||||||||||||||||||||||||
Sbjct  492  TGATCTCCAGATCGGGCTGTGTAAACATTTCTCTTCATGTGGAGAGGTCAC  542



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 31446576022


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5