BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg911192
Length=831
Score E
Sequences producing significant alignments: (Bits) Value
AT1G13990.3 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 547 5e-155
> AT1G13990.3 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures;
EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s:
Protein of unknown function DUF3110 (InterPro:IPR021503);
Has 4 Blast hits to 4 proteins in 1 species: Archae -
0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 4; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:4794756-4796594
FORWARD LENGTH=1099
Length=1099
Score = 547 bits (296), Expect = 5e-155
Identities = 336/356 (94%), Gaps = 0/356 (0%)
Strand=Plus/Plus
Query 476 ACAGTGAAGTGGAAAAGGAGCTTGGACTGTTGTTTCCTAGTAGGATCAGCAACCAGACAA 535
|||||||||| ||||| ||||||||||||||||| |||||||||||||||||||||||||
Sbjct 626 ACAGTGAAGTAGAAAAAGAGCTTGGACTGTTGTTCCCTAGTAGGATCAGCAACCAGACAA 685
Query 536 AACAGTCTAGACCCAAAACTAAATTCGATATGCTCGTAGAAGACATTCGAGATGGAGTTC 595
| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 686 AGCAGGCTAGACCCAAAACTAAATTCGATATGCTCGTAGAAGACATTCGAGATGGAGTAC 745
Query 596 TGGTTTTCGAAGATGTGAATGAGGCTGTTCGATACTGTGACCTATTACAAGGTGGAGGAA 655
||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||| |
Sbjct 746 TGGTTTTCGAAGATGTGAATGAGGCTGTTAGATACTGTGACCTATTACAAGGGGGAGGGA 805
Query 656 AAGGGTGTGAAGGCGTCGCTGAGATTGAGGCCTCATCTGTTTTTGATCTTTGCCGGAAAA 715
||||||||||||| |||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 806 AAGGGTGTGAAGGTGTCGCTGAGATTGAGGCCTCCTCTGTTTTTGATCTTTGTCGGAAAA 865
Query 716 CAAGGTCTCTGGCAGTTCTCTTCCGCCGTGGAAGAACACCACCTACACCTCAGACACTGG 775
|||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct 866 CAAGGTCTCTGGCAGTGCTCTTCCGCCGTGGAAGAACACCACCTACACCTCAGACGCTGG 925
Query 776 AGCGTAATCTAGGATCCCGTAAGCGGTCTCTTGAGGACTTAAGGGATAGTAAATAG 831
| |||||||| |||||||| ||||| |||||||||||||| ||||||| |||||||
Sbjct 926 AACGTAATCTCGGATCCCGGAAGCGTTCTCTTGAGGACTTGAGGGATAATAAATAG 981
Score = 544 bits (294), Expect = 7e-154
Identities = 359/389 (92%), Gaps = 9/389 (2%)
Strand=Plus/Plus
Query 1 ATGGAATCGCTAACATCTATTTCTCCTTCCATAATTCTCCCTCCGACCACCGCAACTACA 60
|||||||||||||||||||||||||||||||||||||| |||||| ||||| | |||||
Sbjct 55 ATGGAATCGCTAACATCTATTTCTCCTTCCATAATTCTTCCTCCGGCCACCACTACTACG 114
Query 61 ATCCCTGTTTCAACTTCAGGATCAGTGTTGATTCGTCTT-CTTCCCCACCGTTCTTCTT- 118
||||| |||||||||||| |||||||||||||||||||| ||| | | |||||||||||
Sbjct 115 ATCCCCGTTTCAACTTCACGATCAGTGTTGATTCGTCTTCCTT-CACGCCGTTCTTCTTA 173
Query 119 CATTTTCCGGCTTGTCCAGCTCCGGGAGACGGATTTCGATTTCGAGAAGAAGACACTTCG 178
| |||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 174 CCTTTT-CGGCTTGTCCAGCTCCGGGAGACGGATTTCGATTTCTAGAAGAAGACACTTCG 232
Query 179 CTAGCTGTAAATCCACCGGCGGC---GGAGGAGGATCAGATAAGCTTGGTGGCGATGAAG 235
|||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 233 TTAGCTGTAAATCGACCGGCGGCGGAGGAGGAGGATCAGATAAGCTTGGTGGCGATGAAG 292
Query 236 AAGAGAGCGAGGAAGTTGAGCGGGCGCTTCACTTGGACGGTACGATTCCTGGGACTTCCG 295
|||||||||||||||||||| ||||||||||||||| |||||||| |||||||||||||
Sbjct 293 AAGAGAGCGAGGAAGTTGAGAAGGCGCTTCACTTGGATGGTACGATCCCTGGGACTTCCG 352
Query 296 ATGAGTTTGTAAGGCAAGTGTCGTCGCGTGCTTACGAGATGCGTCGGAAA-TTAGAGCAG 354
||||||||||||||||||| ||||||||||||||||| |||||||||||| || ||||||
Sbjct 353 ATGAGTTTGTAAGGCAAGTTTCGTCGCGTGCTTACGACATGCGTCGGAAACTT-GAGCAG 411
Query 355 ACGTTTGATTCCACCAGCTATGACGTGTT 383
|||||||||||||| |||||||||| |||
Sbjct 412 ACGTTTGATTCCACTAGCTATGACGAGTT 440
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40488722482
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5