BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg911231 Length=1986 Score E Sequences producing significant alignments: (Bits) Value AT1G14380.1 | Symbols: IQD28 | IQ-domain 28 | chr1:4918010-4921... 3011 0.0 > AT1G14380.1 | Symbols: IQD28 | IQ-domain 28 | chr1:4918010-4921596 REVERSE LENGTH=2436 Length=2436 Score = 3011 bits (1630), Expect = 0.0 Identities = 1884/2004 (94%), Gaps = 27/2004 (1%) Strand=Plus/Plus Query 1 ATGGGAAAGACTCCTGGTAAATGGATCAAGACTTTGCTTCTCGGGAAGAAGTCCCCCAAG 60 ||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| Sbjct 173 ATGGGAAAGACTCCTGGTAAATGGATCAAGACTTTGCTTCTCGGGAAGAAGTCGCCTAAG 232 Query 61 TCGAATTCGGATAACCGAAGCCAGAAACTGAAATCTGCTAAGAAAGAAGAGCTGGTGGCA 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 233 TCGAATTCGGATAACCGAAGCCAGAAACTGAAATCTGCTAAGAAAGAAGAGCTGGTGGAA 292 Query 121 TCGGTGACAGAAGATTTTTCAAACGTAACTGTTGATCCTCCAGTCGTTTCATCACAGCCA 180 ||||||||||||||||| |||||| |||| ||||||||||| || ||||||||||| ||| Sbjct 293 TCGGTGACAGAAGATTTGTCAAACTTAACAGTTGATCCTCCGGTGGTTTCATCACAACCA 352 Query 181 GTTCCAGCTTCTACTGCTCAAGATGTGGTTTCTCCAGTCAATGACGATGAGTCGAAGGAT 240 ||||||||||||||||||||| |||||||||||||| |||||| |||||||| |||||| Sbjct 353 GTTCCAGCTTCTACTGCTCAAAATGTGGTTTCTCCAATCAATGGTGATGAGTCCAAGGAT 412 Query 241 ACTCTCGAGTCAAGGAATGAATTGGGAGAACTCGAGCTTGAACAAGCTGCAATTAAGGTT 300 | |||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||| Sbjct 413 AATCTCGAGTCAAGGAATGACTTGGGAGAAGTCGAGCTTGAACAAGCTGCAATTAAGGTT 472 Query 301 CAAGCTACCTTCAGAGCTCATCAGGCACGTAGAGCATTTCGAACTCTTAAAGGTATCATC 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 473 CAAGCTACCTTCAGAGCTCATCAGGCACGTAGAGCATTTCGAACTCTTAAAGGTATCATC 532 Query 361 AGGCTGCAGGCAGTTATCCGTGGTCACTTGGTGAGAAGACAAGCCATTGCTACATATTCA 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 533 AGGCTGCAGGCAGTTATCCGTGGTCACTTGGTGAGAAGACAAGCCATTGCTACATATTCA 592 Query 421 TGTATATGGGGAATTGTGAAGTTTCAGGCTCTTGTTCGTGGCCAGAAAGCTAGATCTTCA 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 593 TGTATATGGGGAATTGTGAAGTTTCAGGCTCTTGTTCGTGGCCAGAAAGCTAGATCTTCA 652 Query 481 GACAATGGGATTCAATTTCAGAAAACACTTTTGGAAGCAAGTGATTCAGAGGCTTTGCAA 540 || | || |||||| |||||||||| || | ||||||||||||||||||| | ||||||| Sbjct 653 GATATTGCGATTCAGTTTCAGAAAAAACATATGGAAGCAAGTGATTCAGAAGTTTTGCAA 712 Query 541 TTGAGCAGCACGTGTAGTTGGATGGATACTCCCACAAAGTTCGTCCTCGTTGAGAAGCTT 600 | ||||| | ||||||||||||||||| |||||||||||||||| | ||||| |||||| Sbjct 713 TCGAGCA-C--GTGTAGTTGGATGGATAATCCCACAAAGTTCGTCTTTGTTGATAAGCTT 769 Query 601 CTAGCTTCTTCACCAACTGCATTGCCTCTGAAGATCCAATATGGTCCTGAGGAACCTAAC 660 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 770 CTAGCTTCTTCACCAACTGCATTGCCTCTGAAGATCCAGTATGGTCCTGAGGAACCTAAC 829 Query 661 TCAGCCAAGGTTTGGCTTGAACGCTGGACACAATTACAAGTTTGGTCTTCTGGTTCACGA 720 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 830 TCAGCCAAGGTTTGGCTTGAACGCTGGACACAATTACAAGTTTGGTCTTCTGGTTCACGA 889 Query 721 GTACCTAGGATTGAGATTCCAAAATCTCAGTCAAAGAAGCGAAACTATCAAGCGGTGGTT 780 ||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| Sbjct 890 GTACCTAGGATTGAGATTCCAAAATCTCAGTCAAAGAAGCGAAACTACCAAGCAGTGGTT 949 Query 781 GAAGCAGAAAAGACAAGGCCAAAGCGAGGTATCAAGAAACCATCCGGCACAACTAGTGGA 840 ||||||||||||| ||||||||||||| |||||||||||||||| ||||||||||||||| Sbjct 950 GAAGCAGAAAAGAAAAGGCCAAAGCGAAGTATCAAGAAACCATCTGGCACAACTAGTGGA 1009 Query 841 ACTGGCTCTAGCCGTTTTACAGCTGAAAGTAGTAAACCTAAACGAAATGTGAGGAAGGCT 900 |||||| |||||||||||||||||||||| | |||||||||||||||||||||||||||| Sbjct 1010 ACTGGCCCTAGCCGTTTTACAGCTGAAAGAAATAAACCTAAACGAAATGTGAGGAAGGCT 1069 Query 901 TCCACGCTTAGTAAAGATCCCCTGAGAAATGAGAGTGGCAAAGCAAAGCCCAATTCGAGA 960 ||||||||||||||||||||||||||||||||||||| ||||||||| | |||||||||| Sbjct 1070 TCCACGCTTAGTAAAGATCCCCTGAGAAATGAGAGTGACAAAGCAAATCACAATTCGAGA 1129 Query 961 AAAAGTAGAAGCGGCTCAAAGGAGGGGTCTCCTTTGGAGATTAAAGACGAGAAGCCCAGT 1020 ||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||| Sbjct 1130 AAAAGTAGAAGCGGCTCAAAGGAGGGGTCGCCTTTGGAGATTAAAGATGAGAAGCCCAGT 1189 Query 1021 CCTAGTCTCAAAAGGTCTTCTCTTTCGAACGGGTCAAAGAAAGCCACCCTTAGATCTGCT 1080 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1190 CCTAGTCTCAAAAGGTCTTCTCTTTCGAACGGGTCAAAGAAAGCCACCCTTAGATCTGCT 1249 Query 1081 GAGAAGAAAAAGAAAGAAACTGCAGATTCT---GTGCAGATAGAGCCTGAAGGGAAAGTA 1137 |||||||| |||||||| | | |||||||| ||||| ||| |||||||||||||||| Sbjct 1250 GAGAAGAAGAAGAAAGATATTCCAGATTCTTCTGTGCAAATACAGCCTGAAGGGAAAGTT 1309 Query 1138 TCAGTGAATGTTCTTGAAGGAGGAGACAGTATTGAGTTTGCTGAAAAGAAGAAAGATACT 1197 |||| ||||||||||||||||||||||| ||||||||||||||||||| ||||||||||| Sbjct 1310 TCAGAGAATGTTCTTGAAGGAGGAGACAATATTGAGTTTGCTGAAAAGGAGAAAGATACT 1369 Query 1198 GCAGATTCTGTGCAGATAGAGCCTGAAGGGATAG-TGACAGAGAATGTTCTTGAAGGAGG 1256 |||||||||||||||||||| ||||||||| || | ||| |||||||||||||||||| Sbjct 1370 ACAGATTCTGTGCAGATAGAGTCTGAAGGGA-AGGTTTCAGGGAATGTTCTTGAAGGAGG 1428 Query 1257 AGAC--AG----TACTGAGTTTGCTGAAAAGGAGGAAGATACTGCAGATTCTGTGCAGAT 1310 ||| || || || |||| ||||||||||| |||||||||||||| |||||||||| Sbjct 1429 AGAAGGAGAAAATATTGTGTTTACTGAAAAGGAGAAAGATACTGCAGATCCTGTGCAGAT 1488 Query 1311 AGAGCCTGAAGGGAAGGTTCTTGAAGGAG-A-A-AATATCGAGTCTTCTGGAAAAGAAAA 1367 |||||||||| ||||||||||||||| || | | |||||||||||||||||||||||||| Sbjct 1489 AGAGCCTGAAAGGAAGGTTCTTGAAGAAGGAGACAATATCGAGTCTTCTGGAAAAGAAAA 1548 Query 1368 AGATACTGCAGATTCTGTGCAGATAGAGTCTGAAGGAAAGGTTCTTGAAGGAGAAGACAA 1427 |||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 1549 AGATACTGGAGATTCTGTGCAGATAGAGTCTGAAGGAAAGGTTCTTGAAGGAGGAGACAA 1608 Query 1428 TATTGAGTTTGGTGAAAAAGAGAAAGATACCGCTGATGCAGTTCCCATCGAATTTGATGT 1487 |||||| |||||||||||||||||||||| ||||||||||||||||||||||||||| | Sbjct 1609 TATTGAATTTGGTGAAAAAGAGAAAGATAAAGCTGATGCAGTTCCCATCGAATTTGATAT 1668 Query 1488 TGTAAAAGATGAGAAGTCACCAGTTTTGGATAG-ACCGGAGGAAGATGAACCCAAAACTG 1546 ||||||||||||||||||||||||||||||||| || |||||||||||||| ||||||| Sbjct 1669 TGTAAAAGATGAGAAGTCACCAGTTTTGGATAGGAC-GGAGGAAGATGAACTGAAAACTG 1727 Query 1547 CAGAGACCAGTGACAAAGGCGAAGAACTTAAATGCT-CAGATGTGAAGGTAAGCTCTGAG 1605 |||||||||||||||||| ||||| |||||||| | ||||||||||||||||||||||| Sbjct 1728 CAGAGACCAGTGACAAAGCCGAAGCCCTTAAATG-TGCAGATGTGAAGGTAAGCTCTGAG 1786 Query 1606 AACGGTAATGTTGGTTCTGATAACACAAAGTCAA-GTGAAAGACGATCATTGCTGACTGG 1664 || ||||||||||||||||||||||||||| ||| |||||| |||| |||||||| ||| Sbjct 1787 AATGGTAATGTTGGTTCTGATAACACAAAG-CAAAGTGAAAAACGAGCATTGCTGCCTGC 1845 Query 1665 AAATATTGA-AAATCAAGATGATGGGCTTACACATAGCGGACGGAAAATCCCCAGCTACA 1723 ||||||||| ||| ||||||||||||||||| | |||||||||||||||||||||||||| Sbjct 1846 AAATATTGACAAA-CAAGATGATGGGCTTACCCTTAGCGGACGGAAAATCCCCAGCTACA 1904 Query 1724 TGGCCCCGACTGCATCTGCAAAGGCCAGAGTCAAAGGAGAAGCCTCTCCGAGGTT-GACC 1782 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | || Sbjct 1905 TGGCCCCGACTGCATCTGCAAAGGCCAGAGTCAAAGGAGAAGCCTCTCCGAGGTTTG-CC 1963 Query 1783 CAAGTGAAGACTGAGATAAATGGGGCATTGCGGCGCCATTCGCTGCCTTCTCCAGCCAAT 1842 |||| |||||||||||||||||||||||| ||||||||||| |||||||||||||||||| Sbjct 1964 CAAGCGAAGACTGAGATAAATGGGGCATTACGGCGCCATTCACTGCCTTCTCCAGCCAAT 2023 Query 1843 GGTAAGCTGAGTACTACTACTATGTCTCCAAGGGCTCACAAACTTCTCCTAGCCTCAGCC 1902 |||||||||||||||||||||||||||||||||||||| ||||||||| ||||||| ||| Sbjct 2024 GGTAAGCTGAGTACTACTACTATGTCTCCAAGGGCTCAAAAACTTCTCTTAGCCTCTGCC 2083 Query 1903 AAAGGATCTATGAACGGCGACAAATCTTTTACTTCTTCCAAGGACATAAGTCACAAGTCA 1962 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 2084 AAAGGATCTATGAACGGCGACAAATCTTTTACTTCTTCCAAGGACATAACTCACAAGTCA 2143 Query 1963 ACCAGAACCGACTGGAAACGGTGA 1986 |||||||||||||||||||||||| Sbjct 2144 ACCAGAACCGACTGGAAACGGTGA 2167 Score = 99.0 bits (53), Expect = 2e-19 Identities = 81/93 (87%), Gaps = 7/93 (8%) Strand=Plus/Plus Query 1323 GAAGGTTCTTGAAGGA-GA-A-AATATCGAGTCTT-CTGGAAAA-GAAAAAGATACTGCA 1377 ||| |||||||||||| || | ||||| |||| || || ||||| || ||||||||| || Sbjct 1315 GAATGTTCTTGAAGGAGGAGACAATATTGAGT-TTGCT-GAAAAGGAGAAAGATACTACA 1372 Query 1378 GATTCTGTGCAGATAGAGTCTGAAGGAAAGGTT 1410 |||||||||||||||||||||||||| |||||| Sbjct 1373 GATTCTGTGCAGATAGAGTCTGAAGGGAAGGTT 1405 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 98393068200 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5