BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg911231
Length=1986
Score E
Sequences producing significant alignments: (Bits) Value
AT1G14380.1 | Symbols: IQD28 | IQ-domain 28 | chr1:4918010-4921... 3011 0.0
> AT1G14380.1 | Symbols: IQD28 | IQ-domain 28 | chr1:4918010-4921596
REVERSE LENGTH=2436
Length=2436
Score = 3011 bits (1630), Expect = 0.0
Identities = 1884/2004 (94%), Gaps = 27/2004 (1%)
Strand=Plus/Plus
Query 1 ATGGGAAAGACTCCTGGTAAATGGATCAAGACTTTGCTTCTCGGGAAGAAGTCCCCCAAG 60
||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 173 ATGGGAAAGACTCCTGGTAAATGGATCAAGACTTTGCTTCTCGGGAAGAAGTCGCCTAAG 232
Query 61 TCGAATTCGGATAACCGAAGCCAGAAACTGAAATCTGCTAAGAAAGAAGAGCTGGTGGCA 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 233 TCGAATTCGGATAACCGAAGCCAGAAACTGAAATCTGCTAAGAAAGAAGAGCTGGTGGAA 292
Query 121 TCGGTGACAGAAGATTTTTCAAACGTAACTGTTGATCCTCCAGTCGTTTCATCACAGCCA 180
||||||||||||||||| |||||| |||| ||||||||||| || ||||||||||| |||
Sbjct 293 TCGGTGACAGAAGATTTGTCAAACTTAACAGTTGATCCTCCGGTGGTTTCATCACAACCA 352
Query 181 GTTCCAGCTTCTACTGCTCAAGATGTGGTTTCTCCAGTCAATGACGATGAGTCGAAGGAT 240
||||||||||||||||||||| |||||||||||||| |||||| |||||||| ||||||
Sbjct 353 GTTCCAGCTTCTACTGCTCAAAATGTGGTTTCTCCAATCAATGGTGATGAGTCCAAGGAT 412
Query 241 ACTCTCGAGTCAAGGAATGAATTGGGAGAACTCGAGCTTGAACAAGCTGCAATTAAGGTT 300
| |||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||
Sbjct 413 AATCTCGAGTCAAGGAATGACTTGGGAGAAGTCGAGCTTGAACAAGCTGCAATTAAGGTT 472
Query 301 CAAGCTACCTTCAGAGCTCATCAGGCACGTAGAGCATTTCGAACTCTTAAAGGTATCATC 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 473 CAAGCTACCTTCAGAGCTCATCAGGCACGTAGAGCATTTCGAACTCTTAAAGGTATCATC 532
Query 361 AGGCTGCAGGCAGTTATCCGTGGTCACTTGGTGAGAAGACAAGCCATTGCTACATATTCA 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 533 AGGCTGCAGGCAGTTATCCGTGGTCACTTGGTGAGAAGACAAGCCATTGCTACATATTCA 592
Query 421 TGTATATGGGGAATTGTGAAGTTTCAGGCTCTTGTTCGTGGCCAGAAAGCTAGATCTTCA 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 593 TGTATATGGGGAATTGTGAAGTTTCAGGCTCTTGTTCGTGGCCAGAAAGCTAGATCTTCA 652
Query 481 GACAATGGGATTCAATTTCAGAAAACACTTTTGGAAGCAAGTGATTCAGAGGCTTTGCAA 540
|| | || |||||| |||||||||| || | ||||||||||||||||||| | |||||||
Sbjct 653 GATATTGCGATTCAGTTTCAGAAAAAACATATGGAAGCAAGTGATTCAGAAGTTTTGCAA 712
Query 541 TTGAGCAGCACGTGTAGTTGGATGGATACTCCCACAAAGTTCGTCCTCGTTGAGAAGCTT 600
| ||||| | ||||||||||||||||| |||||||||||||||| | ||||| ||||||
Sbjct 713 TCGAGCA-C--GTGTAGTTGGATGGATAATCCCACAAAGTTCGTCTTTGTTGATAAGCTT 769
Query 601 CTAGCTTCTTCACCAACTGCATTGCCTCTGAAGATCCAATATGGTCCTGAGGAACCTAAC 660
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 770 CTAGCTTCTTCACCAACTGCATTGCCTCTGAAGATCCAGTATGGTCCTGAGGAACCTAAC 829
Query 661 TCAGCCAAGGTTTGGCTTGAACGCTGGACACAATTACAAGTTTGGTCTTCTGGTTCACGA 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 830 TCAGCCAAGGTTTGGCTTGAACGCTGGACACAATTACAAGTTTGGTCTTCTGGTTCACGA 889
Query 721 GTACCTAGGATTGAGATTCCAAAATCTCAGTCAAAGAAGCGAAACTATCAAGCGGTGGTT 780
||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 890 GTACCTAGGATTGAGATTCCAAAATCTCAGTCAAAGAAGCGAAACTACCAAGCAGTGGTT 949
Query 781 GAAGCAGAAAAGACAAGGCCAAAGCGAGGTATCAAGAAACCATCCGGCACAACTAGTGGA 840
||||||||||||| ||||||||||||| |||||||||||||||| |||||||||||||||
Sbjct 950 GAAGCAGAAAAGAAAAGGCCAAAGCGAAGTATCAAGAAACCATCTGGCACAACTAGTGGA 1009
Query 841 ACTGGCTCTAGCCGTTTTACAGCTGAAAGTAGTAAACCTAAACGAAATGTGAGGAAGGCT 900
|||||| |||||||||||||||||||||| | ||||||||||||||||||||||||||||
Sbjct 1010 ACTGGCCCTAGCCGTTTTACAGCTGAAAGAAATAAACCTAAACGAAATGTGAGGAAGGCT 1069
Query 901 TCCACGCTTAGTAAAGATCCCCTGAGAAATGAGAGTGGCAAAGCAAAGCCCAATTCGAGA 960
||||||||||||||||||||||||||||||||||||| ||||||||| | ||||||||||
Sbjct 1070 TCCACGCTTAGTAAAGATCCCCTGAGAAATGAGAGTGACAAAGCAAATCACAATTCGAGA 1129
Query 961 AAAAGTAGAAGCGGCTCAAAGGAGGGGTCTCCTTTGGAGATTAAAGACGAGAAGCCCAGT 1020
||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 1130 AAAAGTAGAAGCGGCTCAAAGGAGGGGTCGCCTTTGGAGATTAAAGATGAGAAGCCCAGT 1189
Query 1021 CCTAGTCTCAAAAGGTCTTCTCTTTCGAACGGGTCAAAGAAAGCCACCCTTAGATCTGCT 1080
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1190 CCTAGTCTCAAAAGGTCTTCTCTTTCGAACGGGTCAAAGAAAGCCACCCTTAGATCTGCT 1249
Query 1081 GAGAAGAAAAAGAAAGAAACTGCAGATTCT---GTGCAGATAGAGCCTGAAGGGAAAGTA 1137
|||||||| |||||||| | | |||||||| ||||| ||| ||||||||||||||||
Sbjct 1250 GAGAAGAAGAAGAAAGATATTCCAGATTCTTCTGTGCAAATACAGCCTGAAGGGAAAGTT 1309
Query 1138 TCAGTGAATGTTCTTGAAGGAGGAGACAGTATTGAGTTTGCTGAAAAGAAGAAAGATACT 1197
|||| ||||||||||||||||||||||| ||||||||||||||||||| |||||||||||
Sbjct 1310 TCAGAGAATGTTCTTGAAGGAGGAGACAATATTGAGTTTGCTGAAAAGGAGAAAGATACT 1369
Query 1198 GCAGATTCTGTGCAGATAGAGCCTGAAGGGATAG-TGACAGAGAATGTTCTTGAAGGAGG 1256
|||||||||||||||||||| ||||||||| || | ||| ||||||||||||||||||
Sbjct 1370 ACAGATTCTGTGCAGATAGAGTCTGAAGGGA-AGGTTTCAGGGAATGTTCTTGAAGGAGG 1428
Query 1257 AGAC--AG----TACTGAGTTTGCTGAAAAGGAGGAAGATACTGCAGATTCTGTGCAGAT 1310
||| || || || |||| ||||||||||| |||||||||||||| ||||||||||
Sbjct 1429 AGAAGGAGAAAATATTGTGTTTACTGAAAAGGAGAAAGATACTGCAGATCCTGTGCAGAT 1488
Query 1311 AGAGCCTGAAGGGAAGGTTCTTGAAGGAG-A-A-AATATCGAGTCTTCTGGAAAAGAAAA 1367
|||||||||| ||||||||||||||| || | | ||||||||||||||||||||||||||
Sbjct 1489 AGAGCCTGAAAGGAAGGTTCTTGAAGAAGGAGACAATATCGAGTCTTCTGGAAAAGAAAA 1548
Query 1368 AGATACTGCAGATTCTGTGCAGATAGAGTCTGAAGGAAAGGTTCTTGAAGGAGAAGACAA 1427
|||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1549 AGATACTGGAGATTCTGTGCAGATAGAGTCTGAAGGAAAGGTTCTTGAAGGAGGAGACAA 1608
Query 1428 TATTGAGTTTGGTGAAAAAGAGAAAGATACCGCTGATGCAGTTCCCATCGAATTTGATGT 1487
|||||| |||||||||||||||||||||| ||||||||||||||||||||||||||| |
Sbjct 1609 TATTGAATTTGGTGAAAAAGAGAAAGATAAAGCTGATGCAGTTCCCATCGAATTTGATAT 1668
Query 1488 TGTAAAAGATGAGAAGTCACCAGTTTTGGATAG-ACCGGAGGAAGATGAACCCAAAACTG 1546
||||||||||||||||||||||||||||||||| || |||||||||||||| |||||||
Sbjct 1669 TGTAAAAGATGAGAAGTCACCAGTTTTGGATAGGAC-GGAGGAAGATGAACTGAAAACTG 1727
Query 1547 CAGAGACCAGTGACAAAGGCGAAGAACTTAAATGCT-CAGATGTGAAGGTAAGCTCTGAG 1605
|||||||||||||||||| ||||| |||||||| | |||||||||||||||||||||||
Sbjct 1728 CAGAGACCAGTGACAAAGCCGAAGCCCTTAAATG-TGCAGATGTGAAGGTAAGCTCTGAG 1786
Query 1606 AACGGTAATGTTGGTTCTGATAACACAAAGTCAA-GTGAAAGACGATCATTGCTGACTGG 1664
|| ||||||||||||||||||||||||||| ||| |||||| |||| |||||||| |||
Sbjct 1787 AATGGTAATGTTGGTTCTGATAACACAAAG-CAAAGTGAAAAACGAGCATTGCTGCCTGC 1845
Query 1665 AAATATTGA-AAATCAAGATGATGGGCTTACACATAGCGGACGGAAAATCCCCAGCTACA 1723
||||||||| ||| ||||||||||||||||| | ||||||||||||||||||||||||||
Sbjct 1846 AAATATTGACAAA-CAAGATGATGGGCTTACCCTTAGCGGACGGAAAATCCCCAGCTACA 1904
Query 1724 TGGCCCCGACTGCATCTGCAAAGGCCAGAGTCAAAGGAGAAGCCTCTCCGAGGTT-GACC 1782
||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct 1905 TGGCCCCGACTGCATCTGCAAAGGCCAGAGTCAAAGGAGAAGCCTCTCCGAGGTTTG-CC 1963
Query 1783 CAAGTGAAGACTGAGATAAATGGGGCATTGCGGCGCCATTCGCTGCCTTCTCCAGCCAAT 1842
|||| |||||||||||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 1964 CAAGCGAAGACTGAGATAAATGGGGCATTACGGCGCCATTCACTGCCTTCTCCAGCCAAT 2023
Query 1843 GGTAAGCTGAGTACTACTACTATGTCTCCAAGGGCTCACAAACTTCTCCTAGCCTCAGCC 1902
|||||||||||||||||||||||||||||||||||||| ||||||||| ||||||| |||
Sbjct 2024 GGTAAGCTGAGTACTACTACTATGTCTCCAAGGGCTCAAAAACTTCTCTTAGCCTCTGCC 2083
Query 1903 AAAGGATCTATGAACGGCGACAAATCTTTTACTTCTTCCAAGGACATAAGTCACAAGTCA 1962
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 2084 AAAGGATCTATGAACGGCGACAAATCTTTTACTTCTTCCAAGGACATAACTCACAAGTCA 2143
Query 1963 ACCAGAACCGACTGGAAACGGTGA 1986
||||||||||||||||||||||||
Sbjct 2144 ACCAGAACCGACTGGAAACGGTGA 2167
Score = 99.0 bits (53), Expect = 2e-19
Identities = 81/93 (87%), Gaps = 7/93 (8%)
Strand=Plus/Plus
Query 1323 GAAGGTTCTTGAAGGA-GA-A-AATATCGAGTCTT-CTGGAAAA-GAAAAAGATACTGCA 1377
||| |||||||||||| || | ||||| |||| || || ||||| || ||||||||| ||
Sbjct 1315 GAATGTTCTTGAAGGAGGAGACAATATTGAGT-TTGCT-GAAAAGGAGAAAGATACTACA 1372
Query 1378 GATTCTGTGCAGATAGAGTCTGAAGGAAAGGTT 1410
|||||||||||||||||||||||||| ||||||
Sbjct 1373 GATTCTGTGCAGATAGAGTCTGAAGGGAAGGTT 1405
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 98393068200
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5