BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg911260

Length=456
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G14630.1 | Symbols:  | unknown protein; BEST Arabidopsis tha...   427    4e-119


> AT1G14630.1 | Symbols:  | unknown protein; BEST Arabidopsis thaliana 
protein match is: unknown protein (TAIR:AT2G01990.1); 
Has 125 Blast hits to 123 proteins in 14 species: Archae - 
0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 125; Viruses 
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:5019955-5021537 
FORWARD LENGTH=813
Length=813

 Score =  427 bits (231),  Expect = 4e-119
 Identities = 257/270 (95%), Gaps = 0/270 (0%)
 Strand=Plus/Plus

Query  187  AAGAATGACTATGACGAAAAGAAGAGGGTAGTGTATCCATTTGGAGTGGTGAAACCAGGT  246
            ||||||||||||||||| ||||||||||| |||||||||||||||||||| |||||||||
Sbjct  452  AAGAATGACTATGACGAGAAGAAGAGGGTGGTGTATCCATTTGGAGTGGTAAAACCAGGT  511

Query  247  GGTCGAGAAGAAGATGTAACCCTAGATGACATTAATAAGAGGATTCTAATGCCACCGGCT  306
            ||||||||||||||| |||| ||| |||||||||||||||||||| |||||||| |||||
Sbjct  512  GGTCGAGAAGAAGATATAACTCTAAATGACATTAATAAGAGGATTTTAATGCCATCGGCT  571

Query  307  CGGCCGGTTCGACATCCGGTTGGAGACTTTGCGTGCCGTCCGTGTGTCTCTGCAGATGGA  366
             ||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct  572  AGGCCGGTTCGACATCCGGTTGGAGACTTTGCATGTCGTCCGTGTGTCTCTGCAGATGGA  631

Query  367  CCGGGTCTATCAGGCAAAGCCGTGGTTGCTTTCACGAAAATACAAACATTAGGGAGGGGC  426
            ||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct  632  CCGGGTCTATCAGGCAAAGCCGTGGTTGCATTCACGAAGATACAAACATTAGGGAGGGGC  691

Query  427  ACAATTACTATTATAAGAACTAAGGGATGA  456
            ||||||||||||||||||||||||||||||
Sbjct  692  ACAATTACTATTATAAGAACTAAGGGATGA  721


 Score =  303 bits (164),  Expect = 7e-82
 Identities = 181/189 (96%), Gaps = 1/189 (1%)
 Strand=Plus/Plus

Query  1    ATGGAAATCGGGGACGTTTCCACCGGATACCTTGAAGACGCACTCATCGAATTCAGTGGG  60
            ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct  173  ATGGAAATCGGGGACGTTTCCACCGGATACCTTGAAGACGCACTCATTGAATTCAGTGGG  232

Query  61   AGAGGCAAACGGAGACGTCTCTCGTTCAACGGCGCCGAGGACAAACCAAATTATGATATA  120
            ||| |||||||||||||||||||||||||||||||||||||||||||| || | ||| ||
Sbjct  233  AGAAGCAAACGGAGACGTCTCTCGTTCAACGGCGCCGAGGACAAACCAGATAACGATTTA  292

Query  121  GACCATTCTCAGAATCATTGGGGCCTGTCTGAGAATTATAGTTGCACGAGTAGTCAGTTT  180
            ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct  293  GACCATTCTCAGAATCATTGGGGTCTGTCTGAGAATTATAGTTGCACGAGTAGTCAGTTT  352

Query  181  GCAGA-GAA  188
            ||||| |||
Sbjct  353  GCAGACGAA  361



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 21715667568


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5