BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg911261
Length=2337
Score E
Sequences producing significant alignments: (Bits) Value
AT1G14640.1 | Symbols: | SWAP (Suppressor-of-White-APricot)/su... 3000 0.0
AT1G14650.1 | Symbols: | SWAP (Suppressor-of-White-APricot)/su... 2695 0.0
AT5G12280.1 | Symbols: | SWAP (Suppressor-of-White-APricot)/su... 279 6e-74
> AT1G14640.1 | Symbols: | SWAP (Suppressor-of-White-APricot)/surp
domain-containing protein | chr1:5023656-5025955 FORWARD
LENGTH=2208
Length=2208
Score = 3000 bits (1624), Expect = 0.0
Identities = 2047/2244 (91%), Gaps = 58/2244 (3%)
Strand=Plus/Plus
Query 1 ATGTTCAATTCGATGCAGATACTGCCACTGGAGGCTCCTCCTGCTGACGGTAACCTAGGT 60
||||||||||||||| ||||||| |||||||||||||||||||||||||| || |||||
Sbjct 1 ATGTTCAATTCGATGAAGATACTACCACTGGAGGCTCCTCCTGCTGACGGGAATTTAGGT 60
Query 61 CCACTTCCTCCGTCGCAATTAACGGATGAAGAAATCAAAGAGAAAGAGTTGCAAACAGAG 120
|||||||||||||||||||||||||||||||||||||||||||| ||||| ||| ||||
Sbjct 61 CCACTTCCTCCGTCGCAATTAACGGATGAAGAAATCAAAGAGAATGAGTTTCAAGGAGAG 120
Query 121 AAAAACATTTCAATTCAAGCTCACATAGCTGTGGCTACTCATACGAAGACTATCGGAATC 180
|||||| |||||||||| ||| |||||||||||||||||||||||| | |||||||||
Sbjct 121 CAAAACAATTCAATTCAAACTCCCATAGCTGTGGCTACTCATACGAATCCAATCGGAATC 180
Query 181 ATTTATCCACCTCCTGATATCAGAAAAATCGTCGAGACAACGGCTCATTTTGTTTCGCAA 240
|||||||||||||| || ||| ||||||||||||||||||||||||| ||||||||||||
Sbjct 181 ATTTATCCACCTCCAGAGATCCGAAAAATCGTCGAGACAACGGCTCAATTTGTTTCGCAA 240
Query 241 AACGGTTTAGAGTTTGAAAACAAAGTTAAAACAGAGAAAGCCAATAACCCTAATTTCAAC 300
|||||||| | ||||| |||||||||||||||||||||||||||||| ||||||||| |
Sbjct 241 AACGGTTTGGCGTTTGGAAACAAAGTTAAAACAGAGAAAGCCAATAATGCTAATTTCAGC 300
Query 301 TTTTTGAAAAGTGATAATCCTTATCATGCCTTTTACCAGCACAAGATCGCTGAGTACT-G 359
|||||||||||||||||||||||||||| |||||||| | ||||| || ||||||| | |
Sbjct 301 TTTTTGAAAAGTGATAATCCTTATCATGGCTTTTACCGGTACAAGGTCACTGAGTA-TAG 359
Query 360 -TGCTCAGATTCGAGACGGAGCTCAAGGTACTGATTTTGATGATACAGAAGATCCCCAAC 418
|| ||| ||||| ||||||||||||||||||||| | ||||||||||||||| |||||
Sbjct 360 TTG-TCATATTCGTGACGGAGCTCAAGGTACTGATGTAGATGATACAGAAGAT-CCCAA- 416
Query 419 TTGATCCTGCTGCTTCTGCTGATGAGTCTCATGCAAAACCTGACCTTCAGGATCAATTTA 478
| | | || |||||||||| ||||||||||||||||||||| ||||||||
Sbjct 417 ---A--------C-T-TGATGATGAGTCTGATGCAAAACCTGACCTTCAGGCTCAATTTA 463
Query 479 GGGTTCCTCGTAAGACTTTAGAAGCTCCTGAACCTGACAAGTATACAGTTAGACTTCCT- 537
||| ||||||||||| ||||||||| ||||||||||| |||||||| ||||||||||||
Sbjct 464 GGGCTCCTCGTAAGATTTTAGAAGCACCTGAACCTGAGAAGTATACTGTTAGACTTCCTG 523
Query 538 ATAGGGATCATGGAGGAGGAGCTTGATATTATTAAGCATACAGCGCAGTTTGTGGCGCGG 597
| |||||||||||||| |||||||||||||||||||| || ||||||||||||||||||
Sbjct 524 A-AGGGATCATGGAGGCTGAGCTTGATATTATTAAGCACACGGCGCAGTTTGTGGCGCGG 582
Query 598 AATGGGGAATCCTTTTTAAGGGGATTGATGAGTAGAGAGATGAACAATACTCAGTTTCAG 657
||||| |||| |||||||||| ||||||| |||||||| |||| ||| |||||||||||
Sbjct 583 AATGGTCAATCGTTTTTAAGGGAATTGATGCGTAGAGAGGTGAATAATTCTCAGTTTCAG 642
Query 658 TTTATGAAGCCAACACATAGTATGTTCACTTTTTTCACTTCTCTGGTTGATGCGTATTCA 717
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 643 TTTATGAAGCCAACACATAGTATGTTCACTTTTTTCACTTCTTTGGTTGATGCGTATTCT 702
Query 718 GAAGTTTTAATGCCTCCCAGAGACTTGAAAGAAAAGCTGAGAAAGAGTGTGGCTGATTTG 777
||||| || |||||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 703 GAAGTATTGATGCCTCCCAGAGATTTGAAAGAAAAGCTGAGAAAGAGTGTTGCTGATTTG 762
Query 778 ACGACTGTTCTTGAGCGTTGTTTGAATCGGCTTGAATGGGATCGTTCCCaggaggaggag 837
||||||||||| ||||||||||||||||||||||| |||||||||| |||||||||||||
Sbjct 763 ACGACTGTTCTCGAGCGTTGTTTGAATCGGCTTGAGTGGGATCGTTTCCAGGAGGAGGAG 822
Query 838 aggaagaaagaagaggatgagaaagagaaggagagagTGCATATGGCTT-TGATTGATTG 896
| ||| ||||||||||||||||||||||||||||||||||| |||| || ||||||||||
Sbjct 823 AAGAACAAAGAAGAGGATGAGAAAGAGAAGGAGAGAGTGCAGATGG-TTATGATTGATTG 881
Query 897 GCATGATTTTGCAGTTGTTGAGTCGATAGATTTTGTAGACGAGGAAGATGAAGAGATGCC 956
| | |||||||||||||||||||| |||||||||| ||||||||| ||| |||| ||||
Sbjct 882 GAAAGATTTTGCAGTTGTTGAGTCTATAGATTTTGCAGACGAGGAGGATAAAGATTTGCC 941
Query 957 AATGCCTATGACACTTGAGGAGGTTATAAGGAGGAGCAAAGTATCAGCCATGGAAGAAGA 1016
||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct 942 AATGCCTATGACACTTGAGGAGGTTATTAGGAGGAGCAAAGTTTCAGCCATGGAAGAAGA 1001
Query 1017 TGAAATTGTTGAGCCTGGAAAGGAGGTTGAAATGGAAATGGATGAAGAAGAAGTTAAGCT 1076
|||||||||||||||||||||||| ||||| ||||| |||||||||||||||||||||||
Sbjct 1002 TGAAATTGTTGAGCCTGGAAAGGAAGTTGAGATGGATATGGATGAAGAAGAAGTTAAGCT 1061
Query 1077 TGTTGCAGAAGGAATGAGAGCAGCAAACCTAGAAGAGTATGTTGGCTCTGTGGAGATTGA 1136
|||||||||||||||||||||||| ||||| ||||||||||||||||||||||||| |
Sbjct 1062 TGTTGCAGAAGGAATGAGAGCAGCGAACCTGGAAGAGTATGTTGGCTCTGTGGAGA-T-- 1118
Query 1137 AAATGTACACTGTGAAGAAGCACCAATGAGAATTGTTAAGAACTGGAAGAGGCCAGAAGA 1196
|| | | ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1119 ---TG-A-A----GAAGAAGCACCAATGAGAATTGTTAAGAACTGGAAGAGGCCTGAAGA 1169
Query 1197 TAGGTTTCTGACAGAGAGAGATTCGAGTAAAGTTGTTATATCACCAATCACTGGTGAGCT 1256
|||||||||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 1170 TAGGTTTCTGACAGAGAGAGATTCGAGTAAAGTTGTTATATCACGGATTACTGGTGAGCT 1229
Query 1257 CATTCCCATTACAGAGATGTCTGAGCACATGCGGATTTCACTTATCGATCCTAAGTTCAA 1316
||||||||||| |||||||||||||||||| ||||||| ||||| ||||||||||| ||
Sbjct 1230 GATTCCCATTACCGAGATGTCTGAGCACATGAGGATTTCTCTTATTGATCCTAAGTTTAA 1289
Query 1317 AGAGCAGAAAGATCGGATGTTTGCTAAGATTCGTGAGACCACACTTGCACAAGATGATGA 1376
||| ||||| ||||||||||||||||||||||||||||| || || ||||||||||||||
Sbjct 1290 AGAACAGAAGGATCGGATGTTTGCTAAGATTCGTGAGACAACTCTCGCACAAGATGATGA 1349
Query 1377 GATTGCTAAAAACATAGTCGGGTTGGCCCGTCTGCGTCCTGATATCTTTGGAACAACGGA 1436
||||||||||||||| |||||||||||||| || ||||||||||||||||||||||| ||
Sbjct 1350 GATTGCTAAAAACATTGTCGGGTTGGCCCGCCTCCGTCCTGATATCTTTGGAACAACAGA 1409
Query 1437 AGAAGAAGTCTCAAATGCTGTAAAAGCAGAGATTGAGAAGAAAGATGAGCAACCAAAACA 1496
||||||||| |||||||||||||||||||| |||||||| |||||||||||||| |||||
Sbjct 1410 AGAAGAAGTTTCAAATGCTGTAAAAGCAGATATTGAGAAAAAAGATGAGCAACCGAAACA 1469
Query 1497 AGTAATATGGGATGGTCACACTGGAAGTATTGGTCGCACAGCAAACCAAGCCTTGACTCA 1556
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1470 AGTAATATGGGATGGTCACACTGGAAGTATTGGTCGCACAGCAAACCAAGCCTTGACTCA 1529
Query 1557 GAACTCAAATGGAGAGCAAGGCGATGGAGTTTATGGTGATCCCAATAGCTTCCCTGGTCC 1616
|||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1530 GAACTCCAATGGAGAGCAAGGCGATGGCGTTTATGGTGATCCCAATAGCTTCCCTGGTCC 1589
Query 1617 AGCCGCTCTTCCTCCTCCTCGACCAGGTGTCCCAACAGTCCGGCCATTGCCACCACCTCC 1676
||| ||| |||||||||||||||||||||||||||| ||||||||| ||||||||||||
Sbjct 1590 AGCTGCTTTTCCTCCTCCTCGACCAGGTGTCCCAACTGTCCGGCCACTGCCACCACCTCA 1649
Query 1677 TAATCTCGCCTTGAACCTCCCTCGTCCTCCTCCTTCTGTTCAGTACCTTGGTGCACCAAG 1736
||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||
Sbjct 1650 AAATCTCGCCTTGAACCTTCCTCGTCCTCCTCCTTCTGTTCAGTACCCTGGTGCACCAAG 1709
Query 1737 GCCATTAGGTGATCCGATGATTCAGCCCATGTATCAACAACATCAGCTCTCGATGCCTGG 1796
||||||||||| ||| ||||| |||||||||||||||||||| |||||||| ||| ||||
Sbjct 1710 GCCATTAGGTGTTCCAATGATGCAGCCCATGTATCAACAACACCAGCTCTCTATGTCTGG 1769
Query 1797 GCCACATGGACACCCTTCGATGATGATGCA-TCCACCACCACAAATGCAGCCTGTTATGC 1855
|||||||||||| ||||| ||||||||| | || ||||||||||||||| ||||||||||
Sbjct 1770 GCCACATGGACATCCTTCAATGATGATG-AGTCGACCACCACAAATGCAACCTGTTATGC 1828
Query 1856 ATGTGCCGTCTCCACCGGGATCTCAGTTT--------GC---T-C---AACCTTATGGTC 1900
||||||| |||||||||||||||||||| || | | ||||||||||||
Sbjct 1829 GTGTGCCGCCTCCACCGGGATCTCAGTTTTCTCATATGCAAGTTCCTCAACCTTATGGTC 1888
Query 1901 AGCTTCCACCGCATTCGATGGGGATGATGCACGTGCACCCACCACCTATGCCTGAAATGC 1960
|||||||||||| |||||||||||||||||| ||| |||||||||| |||| ||||
Sbjct 1889 AGCTTCCACCGCTTTCGATGGGGATGATGCA-----ACC-ACCACCTATGGCTGAGATGC 1942
Query 1961 CTCCTCCACCACCACCCGGGGAGGCACCACCGCCTCTTCCTGAGGAGCCAGAGCCAAAGA 2020
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1943 CTCCTCCTCCACCACCCGGGGAGGCACCACCGCCTCTTCCTGAGGAGCCAGAGCCAAAAA 2002
Query 2021 GACAAAAGTTCGTTGAGTCAGCCCTTGTTCCAGAAGACCAGTTTCTTGCTCAGTATCCGG 2080
|||| ||| ||| |||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 2003 GACAGAAGCTCGATGAGTCAGCCCTTGTTCCAGAAGACCAGTTTCTTGCTCAGCATCCGG 2062
Query 2081 GTCCGGCTACAATCAGGGTTTCTAAGCCAAACGAGAATGATGGACAAGTCATGGAGATCA 2140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2063 GTCCGGCTACAATCAGGGTTTCTAAGCCAAACGAGAATGATGGACAAGTCATGGAGATCA 2122
Query 2141 CAGTGCAGTCGTTATCCGAAAATGTGGGAAGTTTGAAGGAGAAAATAGCTGGAGAGATGC 2200
|||||||||||||||||||||| ||||||||||||||||||||||||||||| || ||||
Sbjct 2123 CAGTGCAGTCGTTATCCGAAAACGTGGGAAGTTTGAAGGAGAAAATAGCTGGGGAAATGC 2182
Query 2201 AAATTCCAGCAAACAAACAGAAGT 2224
||||||||||||||||||||||||
Sbjct 2183 AAATTCCAGCAAACAAACAGAAGT 2206
> AT1G14650.1 | Symbols: | SWAP (Suppressor-of-White-APricot)/surp
domain-containing protein / ubiquitin family protein |
chr1:5027662-5030792 FORWARD LENGTH=2789
Length=2789
Score = 2695 bits (1459), Expect = 0.0
Identities = 2096/2392 (88%), Gaps = 89/2392 (4%)
Strand=Plus/Plus
Query 1 ATGTTCAATTCGATGCAGATACTGCCACTGGAGGCTCCTCCTGCTGACGGTAACCTAGGT 60
||||||| ||||||||||||||||||||||||||||||||| | || || || |||||
Sbjct 160 ATGTTCAGCTCGATGCAGATACTGCCACTGGAGGCTCCTCCTACGGATGGGAAGTTAGGT 219
Query 61 CCACTTCCTCCGTCGCAATTAACGGATGAAGAAATCAAAGAGAAAGAGTTGCAAACAGAG 120
||||||||||||||||||||||| ||| | ||| || |||||| ||||||||| |||||
Sbjct 220 CCACTTCCTCCGTCGCAATTAACAGATCAGGAAGTCGAAGAGAGGGAGTTGCAAGCAGAG 279
Query 121 AAAAACATTTCAATTCAAGCT-C-AC-ATAGCTGTGGCTACTCATACGAAGACTATCGGA 177
|||| | ||||| || |||| | | ||||| |||||||| |||| ||||||||||
Sbjct 280 CAAAATAATTCAAATCTAGCTCCTCCGGCGGCTGTTGCTACTCACACGAGGACTATCGGA 339
Query 178 ATCATTTATCCACCTCCTGATATCAGAAAAATCGTCGAGACAACGGCTCATTTTGTTTCG 237
|||||| |||||||||| |||||||||| || || |||| ||||||||| ||||| ||
Sbjct 340 ATCATTCATCCACCTCCAGATATCAGAACTATTGTTGAGAAAACGGCTCAGTTTGTCTC- 398
Query 238 C-AAAACGGTTTAGAGTTTGAAAACAAAG-TTAAAACAGAG-AAAGCCAATAACCCTAAT 294
| |||||||||| ||||||||||| | | || | || || | || || ||||
Sbjct 399 CAAAAACGGTTTGGAGTTTGAAAA-GAGGATT-ATTGTTAGTAATGAAAAGAATGCTAAG 456
Query 295 TTCAACTTTTTGAAAAG-TGATAATCCTTATCATGCCTTTTACCAGCACAAGATCGCTGA 353
|||||||||||||| || | | ||||||||||||||||||||||||||||| || ||||
Sbjct 457 TTCAACTTTTTGAAGAGCTCA-GATCCTTATCATGCCTTTTACCAGCACAAGCTCACTGA 515
Query 354 GTACTGTGCTCAGATTCGAGACGGAGCTCAAGGTACTGAT--TT-TGATGATACAGA-AG 409
||| ||||||||| | |||||||||||| ||||||||| || |||| ||| | ||
Sbjct 516 ATACCGTGCTCAGAATAAAGACGGAGCTCAGGGTACTGATGATTCAGATGGTAC-TACAG 574
Query 410 ATCCCCAACTTGATCCTGCTGCTTCTGCTGA---TG-AG-T-CTCATGCAAAACCTGACC 463
|||||||||||||| ||| ||| ||| ||| || || | | || || |||| ||||
Sbjct 575 ATCCCCAACTTGATACTGGAGCTGCTGATGAGTCTGAAGCTGGTGATACACAACCCGACC 634
Query 464 TTCAGGATCAATTTAGGGTTCC-TCGTAAGACTTTAGAAGCTCCTGAACCTGACAAGTAT 522
|||||| |||||||||| |||| || |||| |||| |||||||| |||||||| ||||||
Sbjct 635 TTCAGGCTCAATTTAGGATTCCTTC-TAAGCCTTTGGAAGCTCCGGAACCTGAGAAGTAT 693
Query 523 ACAGTTAGACTTCCT-ATAGGGATCATGGAG-GAGGAGCTTGATATTATTAAGCAT-ACA 579
||||||||||||||| | |||||||| || | || ||||||||||||||||||| | |||
Sbjct 694 ACAGTTAGACTTCCTGA-AGGGATCACGG-GTGAAGAGCTTGATATTATTAAGC-TCACA 750
Query 580 GCGCAGTTTGTGGCGCGGAATGGGGAATCCTTTTTAAGGGGATTGAT-GAGTAGAGAGAT 638
|| ||||||||||| ||||||||| |||| ||| ||| ||||||| | || ||||||||
Sbjct 751 GCACAGTTTGTGGCACGGAATGGGAAATCGTTTCTAACGGGATTG-TCGAATAGAGAGAA 809
Query 639 GAACAATACTCAGTTTCAGTTTATGAAGCCAACACATAGTATGTTCACTTTTTTCACTTC 698
|||||| |||||||||| ||||||||||||||||| || |||||||||||||| |||||
Sbjct 810 CAACAATCCTCAGTTTCATTTTATGAAGCCAACACACAGCATGTTCACTTTTTTTACTTC 869
Query 699 TCTGGTTGATGCGTATTCAGAAGTTTTAATGCCTCCCAGAGACTTGAAAGAAAAGCTGAG 758
|||||||||||||||||| ||||| ||||||||||||| ||| |||||||||||||||||
Sbjct 870 TCTGGTTGATGCGTATTCGGAAGTATTAATGCCTCCCAAAGATTTGAAAGAAAAGCTGAG 929
Query 759 AAAGAGTG-TGGCTGATTTGACGACTGTTCTTGAGCGTTGTTTGAATCGGCTT-GAATGG 816
|||||||| | ||||||||||||||||||||||||||||||||| ||| | || ||||||
Sbjct 930 AAAGAGTGCT-GCTGATTTGACGACTGTTCTTGAGCGTTGTTTGCATC-GTTTGGAATGG 987
Query 817 GATCGTTCCCaggaggaggagaggaagaaagaagaggatgagaaagagaaggagagagTG 876
||||||||||||||| || ||| ||||||||||||||||||||||||| ||| |||||
Sbjct 988 GATCGTTCCCAGGAGCAGCAGAAGAAGAAAGAAGAGGATGAGAAAGAGCTTGAGCGAGTG 1047
Query 877 CATATGGCTTTGATTGATTGGCATGATTTTGCAGTTGTTGAGTCGATAGATTTTGTAGAC 936
|| |||||| ||||||||||||||||||||| |||||||||||||||||||||| |||
Sbjct 1048 CAGATGGCTATGATTGATTGGCATGATTTTGTGGTTGTTGAGTCGATAGATTTTGCGGAC 1107
Query 937 GAGGAAGATGAAGAGATGCCAATGCCTATGACACTTGAGGAGGTTATAAGGAGGAGCAAA 996
||||||||||||||| ||||| ||||||||||||||| |||||||||||||||||||||
Sbjct 1108 GAGGAAGATGAAGAGTTGCCACCGCCTATGACACTTGACGAGGTTATAAGGAGGAGCAAA 1167
Query 997 GTATCAGCCATGGAAGAAGATGAAATTGTTGAGCCTGGAAAGGAGGTTGAAATGGAAATG 1056
| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1168 GCATCAGCCATGGAAGAAGATGAAATTGTTGAGCCTGGAAAGGAGGTCGAAATGGAAATG 1227
Query 1057 GATGAAGAAGAAGTTAAGCTTGTTGCAGAAGGAATGAGAGCAGCAAACCTAGAAGAGTAT 1116
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1228 GACGAAGAAGAAGTTAAGCTTGTTGCAGAAGGAATGAGAGCAGCAAACCTAGAAGAG-A- 1285
Query 1117 GTTGGCTCTGTGGAGATTGAAAATGTACACTG-TGAAGAAGCACCAATGAGAATTGTTAA 1175
| | | | |||||||||||||||| || |||||||||||| ||||||||||||||
Sbjct 1286 -AT-G---T-T-AAGATTGAAAATGTACA-TGATGAAGAAGCACCTATGAGAATTGTTAA 1337
Query 1176 GAACTGGAAGAGGCCAGAAGATAGGTTTCTGACAGAGAGAGATTCGAGTAAAGTTGTTAT 1235
||||||||||||||||||||| ||| | | |||||||||||| | | ||||||||||||
Sbjct 1338 GAACTGGAAGAGGCCAGAAGACAGGATCCCAACAGAGAGAGATCCAACTAAAGTTGTTAT 1397
Query 1236 ATCACCAATCACTGGTGAGCTCATTCCCATT-ACAGAGATGTCTGAGCACATGCGGATTT 1294
||||||||| ||||| ||||| ||||||||| || |||||||||||||||||| ||||||
Sbjct 1398 ATCACCAATTACTGGAGAGCTGATTCCCATTAAC-GAGATGTCTGAGCACATGAGGATTT 1456
Query 1295 CACTTATCGATCCTAAGTTCAAAGAGCAGAAAGATCGGATGTTTGCTAAGATTCGTGAGA 1354
| ||||| ||||||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 1457 CTCTTATTGATCCTAAGTTCAAAGAACAGAAGGATCGGATGTTTGCTAAGATTCGTGAGA 1516
Query 1355 CCACACTTGCACAAGATGATGAGATTGCTAAAAACATAGTCGGGTTGGCCCGTCTGCGTC 1414
|||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1517 CCACTCTTGCACAAGATGATGAGATTGCTAAAAACATAGTCGGGTTGGCCCGCCTGCGTC 1576
Query 1415 CTGATATCTTTGGAACAACGGAAGAAGAAGTCTCAAATGCTGTAAAAGCAGAGATTGAGA 1474
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1577 CTGATATCTTTGGAACAACCGAAGAAGAAGTCTCAAATGCTGTAAAAGCAGAGATTGAGA 1636
Query 1475 AGAA-A--GATGAGCAACCAAAACAAGTAATATGGGATGGTCACACTGGAAGTATTGGTC 1531
|||| | |||||||| || || ||||| ||||||||||||||||| |||||||||||||
Sbjct 1637 AGAAGAAAGATGAGCAGCCCAAGCAAGTGATATGGGATGGTCACACAGGAAGTATTGGTC 1696
Query 1532 GCACAGCAAACCAAGCCTTGACTCAGAACTCAAATGGAGAG---CAAGGCGATGGAGTTT 1588
||||||||||||||||||||| ||||||| | ||||||||| ||||| ||||| ||||
Sbjct 1697 GCACAGCAAACCAAGCCTTGAGTCAGAACGCTAATGGAGAGGAGCAAGGTGATGGCGTTT 1756
Query 1589 ATGGTGATCCCAATAGCTTCCCTGGTCCAGCCGCTCTTCCTCCTCCTCGACCAGGTGTCC 1648
| || |||||||||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct 1757 ACGGAGATCCCAATAGCTTCCCTGGTCCAGCTGCTCTTCCACCTCCTCGACCAGGTGTCC 1816
Query 1649 CAACAGTCCGGCCATTGCCACCACCTCCTAATCTCGCCTTGAACCTCCCTCGTCCTCCTC 1708
||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1817 CAATAGTCCGACCATTGCCACCACCTCCTAATCTCGCCTTGAACCTCCCTCGTCCTCCCC 1876
Query 1709 CTTCTGTTCAGTACCTTGGTGCACCAAGGCCATTAGGTGATCCGATGATTCAGCCCATGT 1768
|||||| |||||||| ||||||||||||||| |||||| ||||||||| |||||||||
Sbjct 1877 CTTCTGCTCAGTACCCCGGTGCACCAAGGCCACTAGGTGTTCCGATGATGCAGCCCATGC 1936
Query 1769 ATCAACAACATCAGCTCTCGATGCCTGGGCCAC-ATGGACACCCTTC-GATGATGATGCA 1826
|||||||||| |||||| | ||||| ||||||| | |||||||| | |||||||||| |
Sbjct 1937 ATCAACAACACCAGCTCACAATGCCAGGGCCACCA-GGACACCCG-CAGATGATGATGAA 1994
Query 1827 TCC-ACCACCACAAATGCAGCCTGTTATGCATGTGCCGTCTCCACCGGGATCTCAGTTTG 1885
|| ||||||||| |||||||||| |||||||||||| |||||||||||||||||||||
Sbjct 1995 -CCGACCACCACAGATGCAGCCTGGTATGCATGTGCCACCTCCACCGGGATCTCAGTTTG 2053
Query 1886 CTCA--A----C-----C-T-----T-ATGGTCAGCTTCCACCGCAT-T-CGATGGGGAT 1925
|||| | | | | | |||||||||||||||| || | | ||||||||
Sbjct 2054 CTCATCATATGCAAATTCCTAGACCTTATGGTCAGCTTCCACC--ATCTGCAATGGGGAT 2111
Query 1926 GATGCACGTGCACCCACCACCTATGCCTGAAATGCCTCCTCCACCACCACCCGGGGAGGC 1985
|||||| ||| |||||||||||||| ||| ||||||| |||||||||| ||||||
Sbjct 2112 GATGCA-----ACC-ACCACCTATGCCTGGGATGGCTCCTCCTCCACCACCCGAGGAGGC 2165
Query 1986 ACCACCGCCTCTTCCTGAGGAGCCAGAGCCAAAGAGACAAAAGTTCGTTGAGTCAGCCCT 2045
||||| |||||||||||||| |||||| |||||||||||||||||| ||||||||||||
Sbjct 2166 TCCACCACCTCTTCCTGAGGAACCAGAGGCAAAGAGACAAAAGTTCGATGAGTCAGCCCT 2225
Query 2046 TGTTCCAGAAGACCAGTTTCTTGCTCAGTATCCGGGTCCGGCTACAATCAGGGTTTCTAA 2105
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 2226 TGTTCCAGAAGACCAGTTTCTTGCTCAGCATCCGGGTCCGGCTACAATCAGGGTTTCTAA 2285
Query 2106 GCCAAACGAGAATGATGGACAAGTCATGGAGATCACAGTGCAGTCGTTATCCGAAAATGT 2165
|||||||||||||||||||||| | |||||||||||||||||||||||||| ||||| ||
Sbjct 2286 GCCAAACGAGAATGATGGACAATTTATGGAGATCACAGTGCAGTCGTTATCTGAAAACGT 2345
Query 2166 GGGAAGTTTGAAGGAGAAAATAGCTGGAGAGATGCAAATTCCAGCAAACAAACAGAAGTT 2225
||||||||||||||||||||||||||| ||||| ||||| ||||||||||||||||||||
Sbjct 2346 GGGAAGTTTGAAGGAGAAAATAGCTGGGGAGATTCAAATCCCAGCAAACAAACAGAAGTT 2405
Query 2226 AAGTGGAAAAGCTGGATTCTTAAAGGACAACATGTCACTTGCACATTACAATGTGGGAGC 2285
||||||||||| || |||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 2406 GAGTGGAAAAGCAGGGTTCTTAAAGGACAACATGTCGCTTGCACATTACAATGTCGGAGC 2465
Query 2286 AGGAGAAATCCTTACACTGTCTTTGAGAGAACGTGGTGGGAGAAAGAGATAG 2337
|||||||||||| ||| |||||||||| ||||||||||||||||||||||||
Sbjct 2466 AGGAGAAATCCTAACATTGTCTTTGAGGGAACGTGGTGGGAGAAAGAGATAG 2517
> AT5G12280.1 | Symbols: | SWAP (Suppressor-of-White-APricot)/surp
RNA-binding domain-containing protein | chr5:3972014-3973636
REVERSE LENGTH=1260
Length=1260
Score = 279 bits (151), Expect = 6e-74
Identities = 238/279 (85%), Gaps = 10/279 (4%)
Strand=Plus/Plus
Query 2035 GAGTCAGCCCTTGTTCCAGAAGACCAGTTTCTTGCTCAGTATCCGGGT-CCGGCTACAAT 2093
||||| | |||||||||||||||||||||||||||||| |||||||| || | || ||
Sbjct 979 GAGTCTGTCCTTGTTCCAGAAGACCAGTTTCTTGCTCAACATCCGGGTTCCT-CAACGAT 1037
Query 2094 CAGGGTTTCTAAGCCAAACGA-GAATGAT-GGACAAGTCATGGAGATCACAGTGCAGTCG 2151
|| ||||||| ||| || || |||| ||| ||||| | |||||||||||||||||
Sbjct 1038 CATGGTTTCTGTTCCAGACCCCGA-TGATTGGA-AAGTCGTTAAGATCACAGTGCAGTCG 1095
Query 2152 TTATCCGAAAATGTGGGAAGTTTGAAGGAGAAAATAGCTGGAGAGATGCAAATTCC-AGC 2210
|||| ||||| |||| ||||||||||||||||||| |||| ||||| ||| |||| | |
Sbjct 1096 CTATCGGAAAACGTGGCAAGTTTGAAGGAGAAAATATCTGGCGAGATCCAATTTCCTA-C 1154
Query 2211 AAACAAACAGAAGTTAAGTGGAAAAGCTGGATTCTTAAAGGACAACATGTCACTTGCACA 2270
|||||||||||||||| |||||||||| ||||||||||||||||||| ||| ||||||||
Sbjct 1155 AAACAAACAGAAGTTACGTGGAAAAGCCGGATTCTTAAAGGACAACACGTCGCTTGCACA 1214
Query 2271 TTACAATGTGGGAGCAGGAGAAATCCTTA-CACTGTCTT 2308
|||||| ||||||||||| |||||| ||| |||||||||
Sbjct 1215 TTACAACGTGGGAGCAGGTGAAATC-TTAACACTGTCTT 1252
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 116013459495
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5