BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg911287
Length=459
Score E
Sequences producing significant alignments: (Bits) Value
AT1G14870.1 | Symbols: PCR2 | PLANT CADMIUM RESISTANCE 2 | chr1... 660 0.0
AT5G35525.1 | Symbols: | PLAC8 family protein | chr5:13707084-... 577 4e-164
AT1G14880.1 | Symbols: PCR1 | PLANT CADMIUM RESISTANCE 1 | chr1... 507 5e-143
> AT1G14870.1 | Symbols: PCR2 | PLANT CADMIUM RESISTANCE 2 | chr1:5128375-5129523
REVERSE LENGTH=740
Length=740
Score = 660 bits (357), Expect = 0.0
Identities = 425/459 (93%), Gaps = 0/459 (0%)
Strand=Plus/Plus
Query 1 ATGGAAGCTCAACACCTTCATGCCAAGCCTCATGCTGAAGGAGAATGGTCCACAGGCTTC 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 66 ATGGAAGCTCAACACCTTCATGCCAAGCCTCATGCTGAAGGAGAATGGTCCACAGGCTTC 125
Query 61 TGTGATTGCTTTTCTGACTGCAAAAACTGTTGTATCACATTCTGGTGTCCATGTATCACA 120
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 126 TGTGATTGCTTTTCTGACTGCAAAAATTGTTGTATCACATTCTGGTGTCCATGTATCACC 185
Query 121 TTTGGCCAAATCGCTGACATTGTAGATCGAGGATCCACTTCGTGTGGTACGGCTGGAGCT 180
||||||||| |||| || |||||||||||||||||||| ||||||||||| |||||||||
Sbjct 186 TTTGGCCAAGTCGCCGAGATTGTAGATCGAGGATCCACATCGTGTGGTACTGCTGGAGCT 245
Query 181 CTATACGCGTTGTTAGCCGTAGTAACTGGTTGTGGGTGTATCTACTCGTGCTTCTATCGT 240
|||||||||||| ||||||||||||||||||||| ||||| ||||| || |||||||||
Sbjct 246 CTATACGCGTTGATAGCCGTAGTAACTGGTTGTGCATGTATATACTCATGTTTCTATCGT 305
Query 241 CAAAAGATGAGAGCTCAGTACAATATTAGAGGTGATGATTGTGGAGATTGCCTTAAACAT 300
||||||||||||||| || ||||||| ||| ||||||||| |||||||||||||||
Sbjct 306 GGAAAGATGAGAGCTCAATATAATATTAAAGGAGATGATTGTACTGATTGCCTTAAACAT 365
Query 301 TCCTTCTGTGAGCTTTGTTCTTTGACCCAACAATACCGTGAACTCAAGCACCGCGGTTTC 360
| || ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 366 TTCTGCTGTGAGCTTTGTTCTTTGACCCAACAATACCGTGAACTCAAGCACCGCGGTTAC 425
Query 361 GATATGAATCTTGGATGGGCGGGGAACGTGGAAAGGCAACAGAACCAAGGAGGTGTGGTA 420
||||||| |||||||||||||||||||||||| || |||||||| |||||||||||||
Sbjct 426 GATATGAGTCTTGGATGGGCGGGGAACGTGGAGAGACAACAGAATCAAGGAGGTGTGGCC 485
Query 421 ATGGGTGCTCCAGCCTTCCAAGGTGGCATGACCCGCTAA 459
||||||||||| | ||||||||| |||||||||||||||
Sbjct 486 ATGGGTGCTCCGGTCTTCCAAGGCGGCATGACCCGCTAA 524
> AT5G35525.1 | Symbols: | PLAC8 family protein | chr5:13707084-13707955
FORWARD LENGTH=596
Length=596
Score = 577 bits (312), Expect = 4e-164
Identities = 412/461 (89%), Gaps = 4/461 (1%)
Strand=Plus/Plus
Query 1 ATGGAAGCTCAACACCTTCATGCCAAGCCTCATGCTGAAGGAGAATGGTCCACAGGCTTC 60
|||| | ||||||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 1 ATGGCATCTCAACACCTTCAAGCCAACCCTCATGCTGAAGGAGAATGGTCCACAGGCTTC 60
Query 61 TGTGATTGCTTTTCTGACTGCAAAAACTGTTGTATCACATTCTGGTGTCCATGTATCACA 120
||||||||||| ||||| ||| |||||||||||||||||| | |||||||||||| |||
Sbjct 61 TGTGATTGCTTCTCTGATTGCCAAAACTGTTGTATCACATGGTTGTGTCCATGTATTACA 120
Query 121 TTTGGCCAAATCGCTGACATTGTAGATCGAGGATCCACTTCGTGTGGTACGGCTGGAGCT 180
||||||||| | ||||| |||||||| |||||| ||| ||||||||||| ||||||||
Sbjct 121 TTTGGCCAAGTTGCTGATATTGTAGACCGAGGAAACACCTCGTGTGGTACTGCTGGAGCA 180
Query 181 CTATACGCGTTGTTAGCCGTAGTAACTGGTTGTGGGTGTATCTACTCGTGCT-TCTATCG 239
||||| | |||| |||||| | ||||||||||||| ||| |||||||||| | |||||||
Sbjct 181 CTATATGTGTTGCTAGCCGCAATAACTGGTTGTGGATGTCTCTACTCGTG-TATCTATCG 239
Query 240 TCAAAAGATGAGAGCTCAGTACAATATTAGAGGTGATGATTGTGGAGATTGCCTTAAACA 299
| |||||| |||||||| ||||||||||||||||||| |||| ||||||||||||||
Sbjct 240 TGGAAAGATCAGAGCTCAATACAATATTAGAGGTGATGGTTGTACTGATTGCCTTAAACA 299
Query 300 TTCCTTCTGTGAGCTTTGTTCTTTGACCCAACAATACCGTGAACTCAAGCACCGCGGTTT 359
|| || ||||||||||||| ||||||| ||| ||||||||||||||||||||||||||||
Sbjct 300 TTTCTGCTGTGAGCTTTGTGCTTTGACACAAGAATACCGTGAACTCAAGCACCGCGGTTT 359
Query 360 CGATATGAATCTTGGATGGGCGGGGAACGTGGA-AAGGCAACAGAACCAAGGAGGTGTGG 418
|||||||| |||||||||||||||||||||||| ||| ||||||||||||||||||||||
Sbjct 360 CGATATGAGTCTTGGATGGGCGGGGAACGTGGAGAAG-CAACAGAACCAAGGAGGTGTGG 418
Query 419 TAATGGGTGCTCCAGCCTTCCAAGGTGGCATGACCCGCTAA 459
||||||||||||||||||||||| ||||||| |||||||
Sbjct 419 CGATGGGTGCTCCAGCCTTCCAAGGCGGCATGAGCCGCTAA 459
> AT1G14880.1 | Symbols: PCR1 | PLANT CADMIUM RESISTANCE 1 | chr1:5132535-5133716
REVERSE LENGTH=765
Length=765
Score = 507 bits (274), Expect = 5e-143
Identities = 402/463 (87%), Gaps = 11/463 (2%)
Strand=Plus/Plus
Query 1 ATGGAAGCTCAACACCTTCATGCCAAGCCTCATGCTGAAGGAGAATGGTCCACAGGCTTC 60
|||||||||| | | ||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 54 ATGGAAGCTC-A-A-CTTCATGCCAAGCCTCATGCTCAAGGAGAATGGTCCACAGGCTTC 110
Query 61 TGTGATTGCTTTTCTGACTGCAAAAACTGTTGTATCACATTCTGGTGTCCATGTATCACA 120
||||||||||| ||||||||| |||||||||||||||||| || |||||||||||||||
Sbjct 111 TGTGATTGCTTCTCTGACTGCCGAAACTGTTGTATCACATTATGTTGTCCATGTATCACA 170
Query 121 TTTGGCCAAATCGCTGACATTGTAGATCGAGGATCCACTTCGTGTGGTACGGCTGGAGC- 179
||||||||| ||||||| ||||||||||||||||||| |||||| || ||||||||||
Sbjct 171 TTTGGCCAAGTCGCTGAGATTGTAGATCGAGGATCCAAATCGTGTTGTGCGGCTGGAGCA 230
Query 180 TCTATACGCGTTGTTAGCCGTAGTAACTGGTTGTGGGTGTATCTACTCGTGCTTCTATCG 239
| ||||| |||| ||| | || |||| |||||||| |||| ||| |||| |||||| |
Sbjct 231 T-TATACATGTTGATAGACTTAATAACAAGTTGTGGGCGTATGTACGCGTGTTTCTATAG 289
Query 240 TCAAAAGATGAGAGCTCAGTACAATATTAGAGGTGATGATTGTGGAGATTGCCTTAAACA 299
| ||||||||||||||| |||||||||| ||| |||| |||| ||||||||||||||
Sbjct 290 TGGAAAGATGAGAGCTCAATACAATATTAAAGGAGATGGTTGTACTGATTGCCTTAAACA 349
Query 300 TTCCTT-CTGTGAGCTTTGTTCTTTGACCCAACAATACCGTGAACTCAAGCACCGCGGTT 358
|| || |||| | || ||| |||||||||||||||||||||||||||||||||||||||
Sbjct 350 TT-TTTGCTGTAACCTCTGTGCTTTGACCCAACAATACCGTGAACTCAAGCACCGCGGTT 408
Query 359 TCGATATGAATCTTGGATGGGCGGGGAACGT-G-GAAAGGCAACAGAACCAAGGAGGTGT 416
||||||||| ||||||||||| ||||||| | |||| ||||| || ||||| || ||
Sbjct 409 TCGATATGAGCCTTGGATGGGCAGGGAACGCAGAGAAA--CAACAAAATCAAGGTGGAGT 466
Query 417 GGTAATGGGTGCTCCAGCCTTCCAAGGTGGCATGACCCGCTAA 459
|| ||||||||||||||||||||||| |||||||||||||||
Sbjct 467 GGCGATGGGTGCTCCAGCCTTCCAAGGCGGCATGACCCGCTAA 509
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 21866470815
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5