BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg911288

Length=240
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G14870.1 | Symbols: PCR2 | PLANT CADMIUM RESISTANCE 2 | chr1...   117    5e-26


> AT1G14870.1 | Symbols: PCR2 | PLANT CADMIUM RESISTANCE 2 | chr1:5128375-5129523 
REVERSE LENGTH=740
Length=740

 Score =  117 bits (63),  Expect = 5e-26
 Identities = 97/112 (87%), Gaps = 7/112 (6%)
 Strand=Plus/Plus

Query  130  GGATGGGCGGGGAATGCGGAAAGGCAACA-AACTCACGGAGGTGTGGCGATGGGTGCATG  188
            |||||||||||||| | ||| || ||||| || ||| ||||||||||| || || |  ||
Sbjct  438  GGATGGGCGGGGAACGTGGAGAGACAACAGAA-TCAAGGAGGTGTGGCCAT-GG-G--TG  492

Query  189  CTCCGGTCTTCCAAGGCGGCATGACCCGATAAGATTTATTTTCTTTATGTAA  240
            |||||||||||||||||||||||||||| ||||| |||||| ||||||||||
Sbjct  493  CTCCGGTCTTCCAAGGCGGCATGACCCGCTAAGAATTATTT-CTTTATGTAA  543



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 10857833784


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5