BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg911297
Length=435
Score E
Sequences producing significant alignments: (Bits) Value
AT4G19640.1 | Symbols: ARA7, ARA-7, ATRABF2B, ATRAB5B, RABF2B, ... 676 0.0
AT5G45130.1 | Symbols: ATRAB5A, ATRABF2A, RABF2A, RAB5A, RHA1, ... 516 8e-146
> AT4G19640.1 | Symbols: ARA7, ARA-7, ATRABF2B, ATRAB5B, RABF2B,
ATRAB-F2B, RAB-F2B | Ras-related small GTP-binding family
protein | chr4:10687198-10689617 REVERSE LENGTH=1014
Length=1014
Score = 676 bits (366), Expect = 0.0
Identities = 386/396 (97%), Gaps = 0/396 (0%)
Strand=Plus/Plus
Query 1 ATGGCTGCAGCTGGAAACAAGAGCATTAACGCCAAATTGGTGTTACTTGGAGATGTTGGA 60
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 169 ATGGCTGCAGCTGGAAACAAGAGCATTAACGCCAAATTGGTGTTGCTTGGAGATGTTGGT 228
Query 61 GCTGGAAAATCAAGTCTTGTGTTACGTTTTGTCAAAGATCAGTTTGTTGAATTCCAGGAA 120
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 229 GCTGGAAAATCAAGTCTTGTGTTACGGTTTGTCAAAGATCAGTTTGTTGAATTCCAGGAA 288
Query 121 TCAACCATTGGTGCTGCTTTTTTCTCACAAACGTTAGCTATCAACGATGCAACTGTCAAG 180
||||||||||||||||||||||||||||||||||||||| | |||||||| ||||| |||
Sbjct 289 TCAACCATTGGTGCTGCTTTTTTCTCACAAACGTTAGCTGTGAACGATGCCACTGTGAAG 348
Query 181 TTTGAGATTTGGGATACAGCGGGTCAGGAACGGTACCATAGTTTGGCTCCAATGTACTAC 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 349 TTTGAGATTTGGGATACAGCGGGTCAGGAACGGTACCATAGTTTGGCTCCAATGTACTAC 408
Query 241 AGAGGTGTTGCTGCTGCAATCATTGTCTTTGATGTTACGAATCAGGCCTCGTTTGAGAGG 300
||||||| |||||||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct 409 AGAGGTGCTGCTGCTGCAATCATTGTTTTTGATGTTACGAATCAGGCTTCGTTTGAGAGG 468
Query 301 GCAAAGAAATGGGTTCAGGAACTGCAGGCACAAGGTAACCCTAATATGGTCATGGCCCTT 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 469 GCAAAGAAATGGGTTCAGGAACTGCAGGCACAAGGTAACCCTAATATGGTCATGGCCCTT 528
Query 361 GCTGGAAACAAATCTGATTTATTAGATGCAAGGAAG 396
||||||||||||||||||||||||||||||||||||
Sbjct 529 GCTGGAAACAAATCTGATTTATTAGATGCAAGGAAG 564
> AT5G45130.1 | Symbols: ATRAB5A, ATRABF2A, RABF2A, RAB5A, RHA1,
ATRAB-F2A, RAB-F2A | RAB homolog 1 | chr5:18244266-18246450
FORWARD LENGTH=1222
Length=1222
Score = 516 bits (279), Expect = 8e-146
Identities = 358/397 (90%), Gaps = 2/397 (1%)
Strand=Plus/Plus
Query 1 ATGGCT-GCAGCTGGAAACAAGAGCATTAACGCCAAATTGGTGTTACTTGGAGATGTTGG 59
|||||| || |||||||||||| ||| |||||||||||||| ||||| |||||||||||
Sbjct 230 ATGGCTAGC-TCTGGAAACAAGAACATCAACGCCAAATTGGTATTACTAGGAGATGTTGG 288
Query 60 AGCTGGAAAATCAAGTCTTGTGTTACGTTTTGTCAAAGATCAGTTTGTTGAATTCCAGGA 119
|||||||||||||||||||||| |||| ||||| |||||||||||||||||||| |||||
Sbjct 289 AGCTGGAAAATCAAGTCTTGTGCTACGGTTTGTGAAAGATCAGTTTGTTGAATTTCAGGA 348
Query 120 ATCAACCATTGGTGCTGCTTTTTTCTCACAAACGTTAGCTATCAACGATGCAACTGTCAA 179
||||||||||||||| ||||||||||| ||||| || ||| | || ||||| ||||| ||
Sbjct 349 ATCAACCATTGGTGCAGCTTTTTTCTCTCAAACATTGGCTGTGAATGATGCGACTGTGAA 408
Query 180 GTTTGAGATTTGGGATACAGCGGGTCAGGAACGGTACCATAGTTTGGCTCCAATGTACTA 239
||||||||| ||||||||||| ||||||||||| ||||| ||||||||||||||||||||
Sbjct 409 GTTTGAGATATGGGATACAGCTGGTCAGGAACGATACCACAGTTTGGCTCCAATGTACTA 468
Query 240 CAGAGGTGTTGCTGCTGCAATCATTGTCTTTGATGTTACGAATCAGGCCTCGTTTGAGAG 299
||| |||| |||||||| || ||||||||||| |||| ||||| ||||| ||||||||
Sbjct 469 CAGGGGTGCAGCTGCTGCTATTATTGTCTTTGACATTACTAATCAAGCCTCATTTGAGAG 528
Query 300 GGCAAAGAAATGGGTTCAGGAACTGCAGGCACAAGGTAACCCTAATATGGTCATGGCCCT 359
||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 529 GGCGAAGAAATGGGTTCAGGAACTGCAGGCACAAGGTAACCCTAATATGGTGATGGCTCT 588
Query 360 TGCTGGAAACAAATCTGATTTATTAGATGCAAGGAAG 396
||||||||||||| ||||||||||||| |||||||||
Sbjct 589 TGCTGGAAACAAAGCTGATTTATTAGACGCAAGGAAG 625
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 20660044839
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5