BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg911315
Length=210
Score E
Sequences producing significant alignments: (Bits) Value
AT1G15120.2 | Symbols: | Ubiquinol-cytochrome C reductase hing... 298 1e-80
AT2G01090.1 | Symbols: | Ubiquinol-cytochrome C reductase hing... 213 5e-55
> AT1G15120.2 | Symbols: | Ubiquinol-cytochrome C reductase hinge
protein | chr1:5202648-5204193 FORWARD LENGTH=744
Length=744
Score = 298 bits (161), Expect = 1e-80
Identities = 173/179 (97%), Gaps = 0/179 (0%)
Strand=Plus/Plus
Query 3 GGCAGATGATGAAGTTGTTGATCCAAAGAAGTACCTTGAGGAATCTTGCAAACCAAAATG 62
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 204 GGCAGATGATGAAGTTGTTGATCCAAAGAAGTACCTTGAGGAATCTTGCAAACCAAAATG 263
Query 63 TGTGAAGCCACTACTCGAATATCAGGCGTGTGTGAAGAGAATCCAAGGTGATGATTCTGG 122
|||||||||||| |||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 264 TGTGAAGCCACTTCTCGAATATCAGGCATGTGTCAAGAGAATCCAAGGTGATGATTCTGG 323
Query 123 CCACAAGCATTGCACTGGCCAGTATTTCGACTACTGGCATTGCATTGACAAATGTGTTG 181
||||||||||||||||||||||||||| ||||||||||| ||||||||||||||| |||
Sbjct 324 CCACAAGCATTGCACTGGCCAGTATTTTGACTACTGGCAATGCATTGACAAATGTTTTG 382
> AT2G01090.1 | Symbols: | Ubiquinol-cytochrome C reductase hinge
protein | chr2:79989-81200 FORWARD LENGTH=537
Length=537
Score = 213 bits (115), Expect = 5e-55
Identities = 157/177 (89%), Gaps = 4/177 (2%)
Strand=Plus/Plus
Query 5 CAGATGATGAAGTTGTTGATCCA-AAGAAG-TACCTTGAGGAATCTTGCAAACCAAAATG 62
|||| || || ||||||||| || || ||| ||| |||||||||||||||||||||||||
Sbjct 110 CAGAAGAAGATGTTGTTGAT-CAGAA-AAGATACTTTGAGGAATCTTGCAAACCAAAATG 167
Query 63 TGTGAAGCCACTACTCGAATATCAGGCGTGTGTGAAGAGAATCCAAGGTGATGATTCTGG 122
||||||||||||||| ||||||||||||||||| ||||| ||||||| |||||| |||||
Sbjct 168 TGTGAAGCCACTACTTGAATATCAGGCGTGTGTCAAGAGGATCCAAGATGATGAGTCTGG 227
Query 123 CCACAAGCATTGCACTGGCCAGTATTTCGACTACTGGCATTGCATTGACAAATGTGT 179
|||||| ||||||||||| || ||||| || ||||||||||| |||||||||||||
Sbjct 228 CCACAAACATTGCACTGGGCAATATTTTGATTACTGGCATTGTGTTGACAAATGTGT 284
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 9406352637
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5