BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg911328
Length=2850
Score E
Sequences producing significant alignments: (Bits) Value
AT1G15240.2 | Symbols: | Phox-associated domain;Phox-like;Sort... 4283 0.0
> AT1G15240.2 | Symbols: | Phox-associated domain;Phox-like;Sorting
nexin, C-terminal | chr1:5243450-5248604 FORWARD LENGTH=3412
Length=3412
Score = 4283 bits (2319), Expect = 0.0
Identities = 2678/2849 (94%), Gaps = 33/2849 (1%)
Strand=Plus/Plus
Query 1 ATGAGCACCCAGAAGCAGGGGGTGACTGTTCGGGACCTGGTAGAGGAAGCCAAGAAACGA 60
||||||||||||||||| | ||||||| |||||||||||||||| |||||||||||||||
Sbjct 350 ATGAGCACCCAGAAGCAAGTGGTGACTATTCGGGACCTGGTAGATGAAGCCAAGAAACGA 409
Query 61 ATTGTAATCCTTGTGATATGCGTCGTCGGACTGTCCTACCTCATGTCCCTGACAAGTTCA 120
||||||||| | || ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 410 ATTGTAATCGTGGTCATATGCGTCGTCGGACTTTCCTACCTCATGTCCCTGACAAGTTCA 469
Query 121 TCGGTTTGGGTAAACCTCCCTGCTGCTGCGTGT-TTGATCAT-CTTCCTTCGTTATTTCT 178
||||||| ||| ||||| || |||||| || | |||||||| ||| ||||||||| |
Sbjct 470 TCGGTTTTGGTTAACCTTACTCCTGCTGTGT-TATTGATCATCCTT-TTTCGTTATTACA 527
Query 179 CAT-TCGATATTGAAATGAAAAGAAAAGCTGCAGCTTACAACAGCAAACC-T--TCGTCT 234
| | |||||| ||||||||||||||||||||||||||||| || ||| || | ||||||
Sbjct 528 C-TCTCGATAGTGAAATGAAAAGAAAAGCTGCAGCTTACACCAACAAGCCATCGTCGTCT 586
Query 235 CTGAATGCACCAACTCTAAATC-AAATACCCGAACTCCCGAAAGCAGCTCCACGTTCTGA 293
|||||||||||||||||||| | ||| ||| |||||||| |||||||||||||| |||||
Sbjct 587 CTGAATGCACCAACTCTAAA-CAAAACACCTGAACTCCCTAAAGCAGCTCCACGGTCTGA 645
Query 294 CTGGAGAAGTAAAGTGAACTCTCAAGTTGTTGAGGATGCAATTGATCACTTCACCCGTCA 353
||||||||| ||||||||||||||||| ||||||||||||||||||||||| || |||||
Sbjct 646 CTGGAGAAGCAAAGTGAACTCTCAAGTCGTTGAGGATGCAATTGATCACTTTACTCGTCA 705
Query 354 CCTCATTTCTGAATGGGTACTGGATCTTTGGTACTCCCGCATTACACCGGATAAGCAAGG 413
|||||||||||||||||| ||||||||||||||||| || ||||||||||||||||||||
Sbjct 706 CCTCATTTCTGAATGGGTTCTGGATCTTTGGTACTCTCGAATTACACCGGATAAGCAAGG 765
Query 414 TCCTGAAGAGTTGGTGTTTATTATCAACCATGTTCTTGGGGAACTTTCACGGCGGTTTAG 473
||||||||| ||||||||||||| ||| |||||||||||||||||||||||||||||||
Sbjct 766 TCCTGAAGAACTGGTGTTTATTATTAACGATGTTCTTGGGGAACTTTCACGGCGGTTTAG 825
Query 474 AAACGTAAATCTTATTGATCTATTGACAAGGGATCTAATTGATATTATATGCCGTCGTGT 533
||| |||||||||||||||||||||||||||||| | |||||||||||||| || |||||
Sbjct 826 AAATGTAAATCTTATTGATCTATTGACAAGGGATTTGATTGATATTATATGTCGCCGTGT 885
Query 534 GGAGCTTTTCCGCGAGTGTCAAGCAAAGATTGAGAGACAACAAAGGAGAAACCTCAGTTT 593
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 886 GGAGCTTTTCCGCGAGTGTCAAGCAAAGATTGAGAGACAACAAAGGAGAAGCCTCAGTTT 945
Query 594 TGAAGACCGAGACTCAGAACTAAGACGTGTGATGGCC-GCTGAAGATAAATTGCACCCTG 652
||||||| ||||||||||||||||||||||||||||| | ||||||||||||||||||||
Sbjct 946 TGAAGACAGAGACTCAGAACTAAGACGTGTGATGGCCAG-TGAAGATAAATTGCACCCTG 1004
Query 653 CGTTGTTCTCTCCTGAATCCGAGCATAAGGTTCTGCAACATATAATGAACAGCCTCATTT 712
| |||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||
Sbjct 1005 CTTTGTTCTCTCCTGAATCCGAGCATAAGGTTCTGCAACATATAGTGAACAGTCTCATTT 1064
Query 713 TACTAACATTTAGGCCAGAGGATCTGCACTGTGCTTTTTTCCACTATACCGTGAGGGAGC 772
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1065 TAGTAACATTTAGGCCAGAGGATCTGCACTGTGCTTTTTTCCACTATACCGTGAGGGAGC 1124
Query 773 TTCTTGCTTGCTGTGTGATCCGACCAGTCCTAAACCTAGCCAATCCTCGGTTCATAAATG 832
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1125 TTTTTGCTTGCTGTGTGATCCGACCAGTCCTAAACCTAGCCAATCCTCGGTTCATAAATG 1184
Query 833 AGAGGATTGAAGCTGCTGTAATGTCAAAGATAAAGACTAGTAACAGATCTAGTGCTGCAG 892
||||||||||||||||||||||||||| ||||||||||| || |||||||||||||||||
Sbjct 1185 AGAGGATTGAAGCTGCTGTAATGTCAAGGATAAAGACTACTATCAGATCTAGTGCTGCAG 1244
Query 893 AAGAGGCTTCTCAGTCTGAAGATCTCTCAAATGTTTCTCCTGATCATTTTTCTAGATATC 952
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1245 AAGAGGCTTCTCAGTCTGAAGATCTCTCAAATGTTTCTCCTGATCATTTTTCTAGATATA 1304
Query 953 TGGACCCCTCTGTCACAGGTGTTGAGCTTGTGCAATTGAAAAATGAACAGCAGAAAAATT 1012
|||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 1305 TGGACCCCTCTGTCACAGGTGTTGAGCTTGTGCAGTTGAAAAATGAACAGCAAAAAAATT 1364
Query 1013 CT-AAAAGAAAAAGCGCTACAGATAAACAGCATGTACCAGATTTCTCTAAAGATCCATTG 1071
|| ||||| ||||||||||||||||||||||||||| ||| |||||||||||||||||
Sbjct 1365 CTAAAAAG-AAAAGCGCTACAGATAAACAGCATGTAAAAGAGCTCTCTAAAGATCCATTG 1423
Query 1072 CTTTCTATGGACACTCGATCTTCCCGATCGTGGAACTCCTTCCCCTCGACTTCCAAAATA 1131
|||||||||||||||||||||||||||||||||||||| |||||||| || |||||||||
Sbjct 1424 CTTTCTATGGACACTCGATCTTCCCGATCGTGGAACTCTTTCCCCTCAACATCCAAAATA 1483
Query 1132 GGTGATGGTAGTAAAGATCCTCAAGGACATCGAGGAGGAGAGGGATGGGGTGACGTATTA 1191
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 1484 GGTGATGGTAGTAAAGATCCTCAAGGACATCGAGGAGGAGAGGGTTGGGGTGACGTGTTA 1543
Query 1192 GACATGATGTCACAAAGGAAAACTGAGACCCTTGCTCCTGAGCATCTTGAAAGTGTGTGG 1251
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1544 GACATGATGTCACAAAGGAAAACTGAGACCCTTGCTCCTGAGCATCTTGAAAGCGTGTGG 1603
Query 1252 GCAAAAGGAAGAAACTATAAAATGAAGGACGGTGAGAAAGTTGAGGAGCGCGTGCCCCCG 1311
|||||||||||||||||||||| |||||| |||| ||||||||| |||||||||||||||
Sbjct 1604 GCAAAAGGAAGAAACTATAAAAAGAAGGAAGGTGGGAAAGTTGATGAGCGCGTGCCCCCG 1663
Query 1312 AGATGGTCTAGCAAGGATAGTGACTTCAATGAAAACACTGTGAATGCAAGAGAGTCCAGT 1371
|||||||||||||||| | |||||| ||||||||||||||||||||||||||||||||||
Sbjct 1664 AGATGGTCTAGCAAGGCTGGTGACTGCAATGAAAACACTGTGAATGCAAGAGAGTCCAGT 1723
Query 1372 CAGCGTAAAGTCGTAATTACAGACAGTCACTTATCAAGTTATTCCTCTGCTGAAGAGGAC 1431
||||||||||| |||| |||||||||||| |||||||||||||||||||||||||||||
Sbjct 1724 CAGCGTAAAGTTGTAAATACAGACAGTCATTTATCAAGTTATTCCTCTGCTGAAGAGGAT 1783
Query 1432 GAGGAGCAAACAAAGAGTAGTCATTCTTATACATCGGAGGATGAGGAAACGGTAACAGGT 1491
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1784 GAGGAGCAAACAAAGAGTAGTCATTCTTATACATCCGAGGATGAGGAAACGGTAACAGGT 1843
Query 1492 CTAAACAGTCCTGGGACTCGAGTCTGGGATGGTCGAACGAAGAAAAATCTTGGTGTTTCA 1551
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1844 CTAAACAGTCCTGGGACTCGTGTCTGGGATGGTCGAACGAAGAAAAATCTTGGTGTTTCA 1903
Query 1552 CGGATACACCATCCACTTGAAAATTCAGGCCGTTTTTTCAAAAAGACCAGTAAAGGGCAT 1611
|||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||
Sbjct 1904 CGGATACACCATCCACTTGAAAATTCAGGCCGTTCTTTAAAAAAGACCAGTAAAGGGCAT 1963
Query 1612 GAACGTTATCAGCAAGTACCTGGACATCAATCTGGCAGGAAGAGATCCAGAATTTCTGGT 1671
|||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 1964 GAACGTTATCAGCAAGTACCCGGTCATCAATCTGGCAGGAAGAGATCCAGAATTTCTGGT 2023
Query 1672 CATACTATAGGCGATGATGATAGCGATGATTCTGAAGATGGTTCTTTGACTAGATCATAC 1731
|||| ||||| |||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 2024 CATATTATAGACGATGATGATAGTGATGATTCTGAAGATGGTTCTTTGACTAGATCATAC 2083
Query 1732 AGCGGAATGTCTGCAACGTCATCTGCATCATATGTTTCAGTGGCAGAAAGTGAACTTCCC 1791
|| ||||||||||||||||||||| ||||||| ||||||| |||||||||||| ||||||
Sbjct 2084 AGTGGAATGTCTGCAACGTCATCTACATCATACGTTTCAGCGGCAGAAAGTGACCTTCCC 2143
Query 1792 AATGCCCCTAGAAGTTCTTTGTTGGTTGATTCCTTTGCGAAGTTGAGATGTGAGGTTCTG 1851
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2144 AATGCCCCTAAAAGTTCTTTGTTGGTTGATTCCTTTGCGAAGTTGAGATGTGAGGTTCTG 2203
Query 1852 GGTGCCAATATTGTGAAGGGTAGTTCTAAGATGTTTGCTGTGTATTCAGTTGCAGTCACA 1911
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2204 GGTGCCAATATTGTGAAGGGTAGTTCTAAGATGTTTGCTGTGTATTCAGTTGCAGTCACA 2263
Query 1912 GATGAAAATAATCATAGCTGGTCTATCAAAAGAAGATTTCGACATTTTGAAGAGCTTCAC 1971
||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 2264 GATGAAAGTAATCATAGCTGGTCTATCAAAAGAAGATTTCGACATTTTGAGGAGCTTCAC 2323
Query 1972 CGACGGCTTAAAGTGTTTCCTGAGTACAATCTTCATTTACCGCCGAAGCATTTCCTATCA 2031
|||||||| |||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 2324 CGACGGCTAAAAGTGTTTCCTGAGTACAAACTTCATTTACCGCCAAAGCATTTCCTATCA 2383
Query 2032 ACAGGCGTGGATATACCTGTTATCCAAGAGAGATGTGTACTACTTGACGAGTATATCAAG 2091
||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 2384 ACAGGCGTGGACATACCTGTTATCCAAGAGCGATGTGTACTACTTGACGAGTATATCAAG 2443
Query 2092 ---CT-----A-C-A-A-CGAATTTCAGGCTCAATTGAAGTTTGGGACTTCCTCAGTGTG 2139
|| | | | | ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 2444 AAGCTTTTGCAGCTACAACGAATTTCAGGATCAATTGAAGTTTGGGACTTCCTCAGTGTG 2503
Query 2140 GATTCCCAGACTTATGCTTTCTCAAGTTCTTTCTCAATCATTGAGACGCTAACAGTTAAA 2199
||||| ||||||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 2504 GATTCTCAGACTTATGCGTTCTCAAGTTCCTTCTCAATCATTGAGACGCTAACAGTTAAA 2563
Query 2200 CCTGTCAGTAAGCCATCCACTGTCACTACAAATATGGCAAATATGAC-CGAGGCAATGCC 2258
||||||| |||| |||| |||||| |||||||||| |||| |||||| | ||||| ||
Sbjct 2564 CCTGTCAATAAGACATCTACTGTCGCTACAAATATAGCAAGTATGACTC-AGGCAGCACC 2622
Query 2259 AGGTCCTCTTCCTTGGAGAGAAAATCTAAGTTCAGAGAATGGGAAATCGGGTCAAAATAT 2318
|||||| |||||| |||| |||||||| ||||| |||||||||| |||||||||||||||
Sbjct 2623 AGGTCCGCTTCCTCGGAGGGAAAATCTGAGTTCTGAGAATGGGATATCGGGTCAAAATAT 2682
Query 2319 GAGGAATAACGTTATGGTGGATGATGTGAAGTCAAAAGTGAAAACTCTTGGAAATGATCA 2378
||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||
Sbjct 2683 GAGGAATAACGTTATGGTGGATGATGTAAAGTCAAAAGTGAAAAATCTTGGAAATGATCA 2742
Query 2379 TATGAAGACGCCTGATTTAGATGTGAGAAACCGCAAAGAAAATGGCGGGCTAAAAGTGGG 2438
| ||||||| |||||| |||||||||||||||||||||| ||||||||||||||||||||
Sbjct 2743 TGTGAAGACACCTGATGTAGATGTGAGAAACCGCAAAGAGAATGGCGGGCTAAAAGTGGG 2802
Query 2439 -ACCTGGACATGCCGATGATGTGGCCTGCGCTGGCCTGCCCACCGAGTGGGTTCCTCCAA 2497
|| | |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2803 TAC-TCAACATGCCGATGATGTGGCCTGCGCTGGCCTGCCCACCGAGTGGGTTCCTCCAA 2861
Query 2498 AGCTAACTTTACCCTTGCTAGACTTAGTAGATGTTGTCTTTCAACTCCAGGAGGGTGGAT 2557
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 2862 AGCTAACATTACCCTTGCTAGACTTAGTAGATGTTGTCTTTCAACTCCAGGAGGGTGGGT 2921
Query 2558 GGATCAGGCGGAAAGCTTTCTGGGTTGCCAAACAGATACTTCAACTTGGGATGGGCGACG 2617
||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct 2922 GGATCAGGCGGAAAGCTTTTTGGGTTGCCAAACAGATACTTCAACTTGGGATGGGGGACG 2981
Query 2618 CATTGGACGATTGGGTACTTGAGAAAATCCGTCTTCTGCGGCGGGGAACTGTAGTTGCAT 2677
|||||||||||||||||||||| ||||| ||||| |||||||||||||||||||||| |
Sbjct 2982 CATTGGACGATTGGGTACTTGAAAAAATTTGTCTTTTGCGGCGGGGAACTGTAGTTGCTT 3041
Query 2678 CTGGAATTCAACGGGTTGAACAAATACTATGGCCGGATGGTGTATTCATGACAAAACATC 2737
|||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 3042 CTGGAATTCAACGGGTTGAACAGATACTATGGCCGGATGGTGTATTCATGACAAAGCATC 3101
Query 2738 CAAAAAGGCAGCAACAATCCAGCATTTCTGAAGAAGAGCAGCGACAAGAAGCAGAGAGAC 2797
|||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||
Sbjct 3102 CAAAAAGGCAGCAACAATCCAGCATTTCTGAAGAGGAGCAGAAACAAGAAGCAGAGAGAC 3161
Query 2798 GAGCAA-GATTTGTTCATGAGCTGATGAT 2825
|||||| | ||||||||||||||||||||
Sbjct 3162 GAGCAAAG-TTTGTTCATGAGCTGATGAT 3189
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 141621280089
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5