BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg911335
Length=1335
Score E
Sequences producing significant alignments: (Bits) Value
AT1G15310.1 | Symbols: ATHSRP54A, SRP54-1 | signal recognition ... 1742 0.0
AT1G48900.1 | Symbols: | Signal recognition particle, SRP54 su... 1223 0.0
AT5G49500.1 | Symbols: | Signal recognition particle, SRP54 su... 1149 0.0
> AT1G15310.1 | Symbols: ATHSRP54A, SRP54-1 | signal recognition
particle 54 kDa subunit | chr1:5269019-5272058 REVERSE LENGTH=1705
Length=1705
Score = 1742 bits (943), Expect = 0.0
Identities = 1112/1190 (93%), Gaps = 26/1190 (2%)
Strand=Plus/Plus
Query 154 GAAAGACCTGTCTTTGCTCCCAAAAAGGCCAAACCTAGTAGTGTAGTTATGTTCGTCGGG 213
||||| |||| |||||| ||||||||||||||||| ||||||||| |||||||||||
Sbjct 380 GAAAG-CCTGCCTTTGCCCCCAAAAAGGCCAAACC---TAGTGTAGTGATGTTCGTCGGT 435
Query 214 TTACAAGGTGCTGGAAAAACCACAACATGTACCAAGTATGCTTACTATCATCAGAAGAAA 273
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 436 TTACAAGGTGCTGGAAAAACCACAACATGTACCAAGTATGCTTACTATCATCAGAAGAAA 495
Query 274 GGGTACAAAACAGCTCTAGTGTGTGCAGATACTTTCAGGGCCGGTGCTTTCGATCAGCTC 333
||||||||| |||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 496 GGGTACAAAGCAGCTCTAGTGTGTGCGGATACTTTCAGGGCCGGTGCTTTTGATCAGCTG 555
Query 334 AAACAGAATGCCACCAAGGCTAAGATCCCCTTTTATGGAAGCTACACAGAATCCGATCCT 393
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 556 AAACAGAATGCCACCAAGGCTAAGATCCCCTTTTATGGAAGCTACACAGAATCCGATCCT 615
Query 394 GTGAAAATTGCTGCTGAGGGAGTTGATAGGTTCAAGAAAGAAAAATGTGATCTTATTATT 453
||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 616 GTGAAAATTGCTGTTGAGGGAGTTGATAGGTTCAAGAAAGAAAAGTGTGATCTTATTATT 675
Query 454 GTTGACACCAGTGGTCGCCATAAACAAGAAGCTTCTCTCTTTGAAGAAATTCTTCAAGTT 513
|||||||||||||||||||||||||||| ||||||||||||||||||||| | |||||||
Sbjct 676 GTTGACACCAGTGGTCGCCATAAACAAGCAGCTTCTCTCTTTGAAGAAATGCGTCAAGTT 735
Query 514 GCTGAAGCAACGGAACCAGATCTTGTTATATTTGTTATGGATAGCAGTATTGGTCAAGCT 573
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 736 GCTGAAGCAACGGAACCAGATCTTGTTATATTTGTTATGGATAGCAGTATTGGTCAAGCT 795
Query 574 GCATTTGATCAAGCTCAAGCATTTAAGCAAACTGTATCTGTTGGAGCTGTTATTATTACT 633
|||||||| |||||| |||| |||||| |||||||||||||||||||||| |||||||||
Sbjct 796 GCATTTGAACAAGCTGAAGCTTTTAAGGAAACTGTATCTGTTGGAGCTGTAATTATTACT 855
Query 634 AAGATGGACGGCCATGCCAAGGGGGGTGGTGCTCTTAGCGCTGTAGCAGCTACAAAAAGT 693
||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct 856 AAGATGGACGGCCATGCCAAGGGAGGTGGTGCTCTTAGCGCTGTTGCAGCTACAAAAAGT 915
Query 694 CCTGTGATATTCATTGGAACAGGAGAGCATATGGATGAGTTTGAAGTGTTTGATGTCAAA 753
||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 916 CCTGTGATATTCATTGGAACAGGAGAGCATATGGATGAGTTTGAAGTGTTTGACGTTAAA 975
Query 754 CCATTTGTCAGCCGTCTCTTAGGAAAGGGTGATTGGTCTGGACTCGTGAATAAACTACAA 813
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 976 CCATTTGTCAGCCGTCTCTTAGGAAAGGGTGATTGGTCTGGACTCGTGGATAAACTACAA 1035
Query 814 GAGGTGGTACCTAAAGATCTACAGCATGAACTTGTAGAAAATCTCTCTCAGGGTAACTTT 873
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1036 GAGGTGGTACCTAAAGATCTACAGAATGAACTTGTAGAAAATCTCTCTCAGGGTAACTTT 1095
Query 874 ACGTTGAGAACTATGTACGACCAGTTCCAGTGTTCTCTGCAGATTCCTCTTAATCAGGTC 933
|||||||||| ||||||||||||||||||||| ||||||| |||||| ||||||||| |
Sbjct 1096 ACGTTGAGAAGTATGTACGACCAGTTCCAGTGCTCTCTGCGGATTCCACTTAATCAG--C 1153
Query 934 AGAATCTCTTGTTCAATAG-TAGCCTGTACC-ATTGCTGAATTGATGCCGAAAGGACATG 991
| | || | | || | | ||||| | | ||||||| ||||||||||||||||||
Sbjct 1154 ----T-T-TTCT-CGAT-GCT-GCCTGGAATTAGTGCTGAAATGATGCCGAAAGGACATG 1204
Query 992 GTGACGAAAGCCGAGCGAAGA-GA-----TACATGACAATGATGGATTCTATGACAGATA 1045
|||| |||||||||| ||||| || ||||||||||||||||||||||||||| |||
Sbjct 1205 GTGAAGAAAGCCGAGTGAAGATGAAGCGATACATGACAATGATGGATTCTATGACAAATA 1264
Query 1046 AAGAACTGGACAGCTCAAACACAAAGGTGTTTAACGAGTCAAGGATAATGCGGATAGCGA 1105
||||||| |||||| ||||| ||||| | ||||||||||||||||||||| |||||||||
Sbjct 1265 AAGAACTTGACAGCCCAAACCCAAAGATTTTTAACGAGTCAAGGATAATGAGGATAGCGA 1324
Query 1106 GAGGGTCAGGGAGGTTAGTAAGAGAAGTGATGGAGTTGTTGGAAGAGTACAAGAGGAAAG 1165
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||
Sbjct 1325 GAGGGTCAGGGAGGTTAGTAAGAGAAGTGATGGAGATGTTGGAAGAGTACAAGAGGATAG 1384
Query 1166 CAAAGACTATGAAAGGAATCAAGATCCCAAAGAATGGAGACATGAGCAACAAGGTCATAC 1225
||||||| |||||||| ||||||||||||||||| |||||||||||||| ||||||||
Sbjct 1385 CAAAGACAATGAAAGGGATCAAGATCCCAAAGAACGGAGACATGAGCAA---GGTCATAC 1441
Query 1226 CGCCTCAGATGCTAAAACAGATGGGCGGCATGAGCGGTCTGCAGAGTCTGATGAAGCAGA 1285
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1442 CGCCTCAGATGCTAAAACAGATGGGCGGCATGAGCGGTCTGCAGAGTCTCATGAAGCAGA 1501
Query 1286 TGGGTTCGGCTAAGGACATGATGGGAATGTTTAGTGGCGGAGACAAGTAG 1335
|||||||||||||||||||||||||||||||| ||||||||| |||||||
Sbjct 1502 TGGGTTCGGCTAAGGACATGATGGGAATGTTTGGTGGCGGAGGCAAGTAG 1551
Score = 239 bits (129), Expect = 6e-62
Identities = 144/151 (95%), Gaps = 2/151 (1%)
Strand=Plus/Plus
Query 2 TGAATGATTGCTTAAACGAGATTACTCGCGCTTTGCTCCAGTCCGATGTTTCTTTTCCCC 61
||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 194 TGAATGATTTCTTAAACGAGATTACTCGCGCTTTGCTCCAGTCCGATGTTTCTTTTGGCC 253
Query 62 TTGT-GAAAGAGATGCAGACCAATATTAAGAAGATCGTTAACCTCGACGATCTAGCAGCT 120
|||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 254 TTGTGGAAA-AGATGCAGACCAATATTAAGAAGATCGTTAACCTCGACGATCTAGCAGCT 312
Query 121 GGCCACAACAAACGGCTGATCATTGAGCAGG 151
|||||||||||||| |||||||| |||||||
Sbjct 313 GGCCACAACAAACGCCTGATCATCGAGCAGG 343
> AT1G48900.1 | Symbols: | Signal recognition particle, SRP54
subunit protein | chr1:18084782-18087879 REVERSE LENGTH=1814
Length=1814
Score = 1223 bits (662), Expect = 0.0
Identities = 949/1081 (88%), Gaps = 45/1081 (4%)
Strand=Plus/Plus
Query 156 AAGACCTGTC-TTTGCTCCCAAAAAGGCCAAACCTAGTAGTGTAGTTATGTTCGTCGGGT 214
||| |||| | |||||||| ||||| || ||| | ||||||||||||||| || || |
Sbjct 407 AAG-CCTG-CGTTTGCTCCTAAAAAAGCTAAAGC---TAGTGTAGTTATGTTTGTTGGAT 461
Query 215 TACAAGGTGCTGGAAAAACCACAACATGTACCAAGTATGCTTACTATCATCAGAAGAAAG 274
|||||||||||||||| || ||||| ||||| ||||||||||| ||||||||||||||||
Sbjct 462 TACAAGGTGCTGGAAAGACGACAACTTGTACTAAGTATGCTTATTATCATCAGAAGAAAG 521
Query 275 GGTACAAAACAGCTCTAGTGTGTGCAGATACTTTCAGGGCCGGTGCTTTCGATCAGCTCA 334
| |||||| ||||| | || ||||| |||||||||||||| ||||| ||||||||||| |
Sbjct 522 GATACAAACCAGCTTTGGTTTGTGCGGATACTTTCAGGGCTGGTGCGTTCGATCAGCTGA 581
Query 335 AACAGAATGCCACCAAGGCTAAGATCCCCTTTTATGGAAGCTACACAGAATCCGATCCTG 394
|||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 582 AACAGAATGCTACCAAGGCTAAGATCCCCTTTTATGGAAGCTACACGGAATCCGATCCTG 641
Query 395 TGAAAATTGCTGCTGAGGGAGTTGATAGGTTCAAGAAAGAAAAATGTGATCTTATTATTG 454
|||||||||||| ||||||||| |||| ||| ||||||||||| |||||||| |||||||
Sbjct 642 TGAAAATTGCTGTTGAGGGAGTAGATACGTTTAAGAAAGAAAACTGTGATCTCATTATTG 701
Query 455 TTGACACCAGTGGTCGCCATAAACAAGAAGCTTCTCTCTTTGAAGAAATTCTTCAAGTTG 514
|||| |||||||||||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct 702 TTGATACCAGTGGTCGCCATAAACAAGAAGCTTCTCTCTTTGAAGAAATGCGTCAAGTTG 761
Query 515 CTGAAGCAACGGAACCAGATCTTGTTATATTTGTTATGGATAGCAGTATTGGTCAAGCTG 574
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 762 CTGAAGCAACGAAACCAGATCTTGTTATATTTGTTATGGATAGCAGTATTGGTCAAGCTG 821
Query 575 CATTTGATCAAGCTCAAGCATTTAAGCAAACTGTAT-CTGTTGGAGCTGTTATTATTACT 633
||||||||||||||||||| |||||||| | ||| | ||||||||||||| |||||||||
Sbjct 822 CATTTGATCAAGCTCAAGCCTTTAAGCAGAGTGT-TGCTGTTGGAGCTGTAATTATTACT 880
Query 634 AAGATGGACGGCCATGCCAAGGGGGGTGGTGCTCTTAGCGCTGTAGCAGCTACAAAAAGT 693
||||||||||||||||||||||| ||||| |||||||||||||| |||||||| ||||||
Sbjct 881 AAGATGGACGGCCATGCCAAGGGTGGTGGGGCTCTTAGCGCTGTTGCAGCTACGAAAAGT 940
Query 694 CCTGTGATATTCATTGGAACAGGAGAGCATATGGATGAGTTTGAAGTGTTTGATGTCAAA 753
||||||||||| || |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 941 CCTGTGATATTTATCGGAACAGGAGAGCATATGGATGAGTTTGAAGTGTTTGACGTCAAA 1000
Query 754 CCATTTGTCAGCCGTCTCTTAGGAAAGGGTGATTGGTCTGGACTCGTGAATAAACTACAA 813
||||||||||||||||||||||||| |||||||||||||||| ||||| |||| ||||||
Sbjct 1001 CCATTTGTCAGCCGTCTCTTAGGAATGGGTGATTGGTCTGGATTCGTGGATAAGCTACAA 1060
Query 814 GAGGTGGTACCTAAAGATCTACAGCATGAACTTGTAGAAAATCTCTCTCAGGGTAACTTT 873
||||| ||||||||||||| ||||| ||||||| | ||||| ||||||||||||||||||
Sbjct 1061 GAGGTAGTACCTAAAGATCAACAGCCTGAACTTCTGGAAAAGCTCTCTCAGGGTAACTTT 1120
Query 874 ACGTTGAGAACTATGTACGACCAGTTCCAGTGT-TCTCTGCAGAT---TCCTCTTAATCA 929
|||||||||| ||||||||||||||||||| | ||| | || ||| |||||
Sbjct 1121 ACGTTGAGAATTATGTACGACCAGTTCCAGAACATA-CTGAACATGGGTCCACTTAA--- 1176
Query 930 GGTCAGAATCTCTTGTTCAATAG-TAGCCTGTACC-ATTGCTGAATTGATGCCGAAAGGA 987
|| || | | || | |||| | | ||||| | | ||||||| ||||||||||||||
Sbjct 1177 GG--AGG-T-T-TTCT-CAAT-GCT-GCCTGGAATTAGTGCTGAAATGATGCCGAAAGGA 1228
Query 988 CATG-GTGACGAAAGCCGAG-CGAAGAGA------TACATGACAATGATGGATTCTATGA 1039
|||| | | ||||||| || |||||| | |||||||||||||||||||||||||
Sbjct 1229 CATGAGAAA-GAAAGCC-AGGCGAAGATAAAGCGGTACATGACAATGATGGATTCTATGA 1286
Query 1040 CAGATAAAGAACTGGACAGCTCAAACACAAAGGTGTTTAACGAGTCAAGGATAATGCGGA 1099
|| || | |||||||||||||||||| |||||||||||||||||||| |||| |||||||
Sbjct 1287 CAAATGATGAACTGGACAGCTCAAACCCAAAGGTGTTTAACGAGTCACGGATGATGCGGA 1346
Query 1100 TAGCGAGAGGGTCAGGGAGGTTAGTAAGAGAAGTGATGGAGTTGTTGGAAGAGTACAAGA 1159
|||| ||||||||||||||| ||||||||||||||||||| ||||||||||||||||||
Sbjct 1347 TAGCAAGAGGGTCAGGGAGGCAAGTAAGAGAAGTGATGGAGATGTTGGAAGAGTACAAGA 1406
Query 1160 GGAAAGC-AA-A---G-A-CTA--TGAAAGGAATCAAGATCCCAAAGAATGGAGACATGA 1210
|| ||| || | | | | | |||||||| |||||||||||||||||||||| ||||
Sbjct 1407 GGCTAGCGAAGATATGGAGCAAGATGAAAGGACTCAAGATCCCAAAGAATGGAGATATGA 1466
Query 1211 G 1211
|
Sbjct 1467 G 1467
> AT5G49500.1 | Symbols: | Signal recognition particle, SRP54
subunit protein | chr5:20077556-20080206 REVERSE LENGTH=1494
Length=1494
Score = 1149 bits (622), Expect = 0.0
Identities = 901/1026 (88%), Gaps = 57/1026 (6%)
Strand=Plus/Plus
Query 166 TTTGCTCCCAAAAAGGCCAAACCTAGTAGTGTAGTTATGTTCGTCGGGTTAC-A----AG 220
||||||||||||||||||||||| ||||||||||||||||||||| |||| | ||
Sbjct 280 TTTGCTCCCAAAAAGGCCAAACC---TAGTGTAGTTATGTTCGTCGGATTACAAGGTGAG 336
Query 221 GTGCTGGAAAAACCACAACATGTACCAAGTATGCTTACTATCATCAGAAG-AAAGGGTAC 279
||||||||||||||||||| ||||||||||||||||| |||||||||||| |||||||||
Sbjct 337 GTGCTGGAAAAACCACAACTTGTACCAAGTATGCTTATTATCATCAGAAGAAAAGGGTAC 396
Query 280 AAAACAGCTCTAGTGTGTGCAGATACTTTCAGGGCCGGTGCTTTCGATCAGCTCAAACAG 339
||| |||||||||||||||| |||||||||||||| |||||||| |||||||| ||||||
Sbjct 397 AAACCAGCTCTAGTGTGTGCGGATACTTTCAGGGCAGGTGCTTTTGATCAGCTGAAACAG 456
Query 340 AATGCCACCAAGGCTAAGATCCCCTTTTATGGAAGCTACACAGAATCCGATCCTGTGAAA 399
||||||||||| |||||||||||| ||||||||| ||||||| ||||||||||||||||
Sbjct 457 AATGCCACCAAATCTAAGATCCCCTATTATGGAAGTTACACAGGATCCGATCCTGTGAAA 516
Query 400 ATTGCTGCTGAGGGAGTTGATAGGTTCAAGAAAGAAAAATGTGATCTTATTATTGTTGAC 459
||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 517 ATTGCTGTTGAGGGAGTTGATAGGTTCAAGAAAGAAAATTGTGATCTTATTATTGTTGAC 576
Query 460 ACCAGTGGTCGCCATAAACAAGAAGCTTCTCTCTTTGAAGAAATTCTTCAAGTTGCTGAA 519
||||||||||||||||||||| |||||||||||||||||||||| | |||| || |||||
Sbjct 577 ACCAGTGGTCGCCATAAACAACAAGCTTCTCTCTTTGAAGAAATGCGTCAAATTTCTGAA 636
Query 520 GCAACGGAACCAGATCTTGTTATATTTGTTATGGATAGCAGTATTGGTCAAGCTGCATTT 579
|||||| |||||||||||||||||||||||||||||||||||||||||||| |||| |||
Sbjct 637 GCAACGAAACCAGATCTTGTTATATTTGTTATGGATAGCAGTATTGGTCAAACTGCGTTT 696
Query 580 GATCAAGCTCAAGCATTTAAGCAAACTGTAT-CTGTTGGAGCTGTTATTATTACTAAGAT 638
|| ||||||| ||||||||| |||||||| | |||| |||||||| ||||||||||||||
Sbjct 697 GAACAAGCTCGAGCATTTAAACAAACTGT-TGCTGTGGGAGCTGTAATTATTACTAAGAT 755
Query 639 GGACGGCCATGCCAAGGGGGGTGGTG-CTCTTAGCGCTGTAGCAGCTACAAAAAGTCCTG 697
||| || ||||||||||| ||||| | ||||||||||||| |||||||||||||||||||
Sbjct 756 GGATGGTCATGCCAAGGGTGGTGG-GACTCTTAGCGCTGTTGCAGCTACAAAAAGTCCTG 814
Query 698 TGATATTCATTGGAACAGGAGAGCATATGGATGAGTTTGAAGTGTTTGATG-TCAAACCA 756
| ||||||||||||||||||||||||||||||||||||||||| ||||||| | |||||
Sbjct 815 TCATATTCATTGGAACAGGAGAGCATATGGATGAGTTTGAAGTTTTTGATGCT-AAACCG 873
Query 757 TTTGTCAGCCGTCTCTTAGGAAAGGGTGAT-TGGTCTGGACTCGTGAATAAACTACAAGA 815
||||||||||||||||||||||| |||||| || |||||| |||||||||||||||||||
Sbjct 874 TTTGTCAGCCGTCTCTTAGGAAATGGTGATATG-TCTGGATTCGTGAATAAACTACAAGA 932
Query 816 GGTGGTACCTAAAGATCTACAGCATGAACTTGTAGAAAAT-CTCTCTCAGGGTAACTTTA 874
||||||||||||||||| ||||| ||||||| | |||| | |||||||| ||||| ||||
Sbjct 933 GGTGGTACCTAAAGATCAACAGCCTGAACTTCTGGAAA-TGCTCTCTCATGGTAAATTTA 991
Query 875 CGTTGAGAACTATGTACGACCAGTTCCAGTGT-TCTCTGCAGATT--CCT-CTTAATCAG 930
| ||||||| ||||||||||||||||||| | ||| | || || ||||| |
Sbjct 992 CATTGAGAATTATGTACGACCAGTTCCAGAACATG-CTGAACATGGGCCCACTTAA---G 1047
Query 931 GTCAGAATCTCTTGTTCAATAG-TAGCCTGTAC--CATTGCTGAATTGATGCCGAAAGG- 986
| || | | || | || | | || |||| | | | |||||| ||||||| | |||
Sbjct 1048 G--AGG-T-T-TTCTCCA-T-GCTA-CCTGGAATGCGT-GCTGAAATGATGCC-AGAGGG 1097
Query 987 ACATG-GTGACGAAAGCCGAG-CGAAGA----G--ATACATGACAATGATGGATTCTATG 1038
||||| | | ||||||| || |||||| | |||||||||||||||||| ||||||
Sbjct 1098 ACATGAGAAA-GAAAGCC-AGGCGAAGATAAAGCGATACATGACAATGATGGACTCTATG 1155
Query 1039 AC-AGATAAAGAACTGGACAGCTCAAA-CACAAAGGTGTTTAACGAGTCAAGGATAATGC 1096
|| | || ||||||||||||||||||| | ||||||||||||||||||||||||||||||
Sbjct 1156 ACTA-ATGAAGAACTGGACAGCTCAAATC-CAAAGGTGTTTAACGAGTCAAGGATAATGC 1213
Query 1097 GGATAGCGAGAGGGTCAGGGAGG-TTAGTAAGAGAAGTGATGGAGTTGTTGGAAGAGTAC 1155
||||||| ||||||||||||||| || |||||||||||||||||| ||||||||||||||
Sbjct 1214 GGATAGCAAGAGGGTCAGGGAGGATT-GTAAGAGAAGTGATGGAGATGTTGGAAGAGTAC 1272
Query 1156 AAGAGG 1161
|| |||
Sbjct 1273 AAAAGG 1278
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65712513405
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5