BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg911360
Length=969
Score E
Sequences producing significant alignments: (Bits) Value
AT1G15540.1 | Symbols: | 2-oxoglutarate (2OG) and Fe(II)-depen... 1441 0.0
> AT1G15540.1 | Symbols: | 2-oxoglutarate (2OG) and Fe(II)-dependent
oxygenase superfamily protein | chr1:5342587-5343705
FORWARD LENGTH=963
Length=963
Score = 1441 bits (780), Expect = 0.0
Identities = 906/966 (94%), Gaps = 12/966 (1%)
Strand=Plus/Plus
Query 1 ATGGGTGGGAATGAAACTAGAGAGCTTCCGATCATCAACCTTTCTGACAAGAACCTAAAA 60
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1 ATGGGTGGGAATGAAACTAGAGAGCTTCCGATCATCAACCTCTCTGACAAGAACCTAAAA 60
Query 61 CAGAACACAGAGCTTTGGAAC-TCGACGAGAGACAGCGTCCGTAAAGCCATGGAACACCA 119
||||||||||||||||||| | || |||||||||||||||||| ||||||||||||||||
Sbjct 61 CAGAACACAGAGCTTTGGAGCTTC-ACGAGAGACAGCGTCCGTGAAGCCATGGAACACCA 119
Query 120 TGGATGGTTTGTGGCTGAGTACAACAACTTTCCCAC-GGAACTTCACCACTCGATTTTGG 178
||||||||||||||| ||||||||||||||||| || || ||||||||| ||||||||||
Sbjct 120 TGGATGGTTTGTGGCCGAGTACAACAACTTTCCAACAGG-ACTTCACCAGTCGATTTTGG 178
Query 179 AGGCCGCTAAGGAACTACTCGATCTTCCTCCCGAAATCAAGATAAAGAACGAGAGCCACA 238
||||||||||||||||||||||||||||| |||||||||| |||||||||||| |||||
Sbjct 179 AGGCCGCTAAGGAACTACTCGATCTTCCTGTCGAAATCAAGCTAAAGAACGAGAACCACA 238
Query 239 AGGCCAGG-CACGGCTACATCACCATGATCTCCGATGGTCAGCCCGTTCACGAAGGTCTT 297
||||| || |||||||||||||||||||| || ||||| ||||| ||||| |||||||||
Sbjct 239 AGGCC-GGACACGGCTACATCACCATGATGTCAGATGGCCAGCCTGTTCATGAAGGTCTT 297
Query 298 GGTATTGACCAAGTCAACGATGTCCAACAGTGCCGCCGATTCACTCGTCTCATGTGGTCT 357
|||||||| |||||||||||||| |||||||||||| ||||| |||||||||||||| ||
Sbjct 298 GGTATTGATCAAGTCAACGATGTTCAACAGTGCCGCGGATTCTCTCGTCTCATGTGGCCT 357
Query 358 GATGATCATCATGACAACGACCGTTTCTGTGAAACTGTTCATGCATATGCGAAAATGCAA 417
||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 358 GATGATCATGATGATAACGACCGTTTCTGTGAAACTGTTCATGCATATGCGAAAATGCAA 417
Query 418 GCAGAACTGGAGCAACTGGTAATAAGGATGCTCTTCGAGAGCTATAACGTGGAGAAGCAT 477
|| ||||| |||||||| || ||||||||||| |||||||||||||||||||||||| ||
Sbjct 418 GCGGAACTAGAGCAACTTGTGATAAGGATGCTATTCGAGAGCTATAACGTGGAGAAGTAT 477
Query 478 GCAGATAAATACATTGGAGGAACAAGGTACCTTCTTCGATTGATGAAATACAAGAGACTC 537
|||| |||||||| |||||||||||||||||||||||| || ||||||||| ||||||
Sbjct 478 ACAGAGAAATACATAGGAGGAACAAGGTACCTTCTTCGACTGCTGAAATACAGGAGACTT 537
Query 538 CCTAATGGAGAACCCAACAGGAAGTTTATTTCTCATACCGACAAGAGCTTCATCTCCATT 597
||||||||||||||||||||||| || ||||||||||| |||||||||||||||||||||
Sbjct 538 CCTAATGGAGAACCCAACAGGAAATTCATTTCTCATACGGACAAGAGCTTCATCTCCATT 597
Query 598 CTCCATCAGAACCATATCACAGGACTCATGTTGAAATCCGAGAAAGAGGATGTTTGGTAT 657
|||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 598 CTCCATCAGAACCACATCACCGGACTCATGTTGAAATCCGAGAAAGAGGATGTTTGGTAT 657
Query 658 CCTTTTACTCCTTCACCAACTCGGTTTGTTGTTATAGCAGGCGATGCCATCATGGCGTGG 717
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 658 CATTTTACTCCTTCACCAACTCGGTTTGTTGTTATAGCAGGCGATGCCATCATGGCGTGG 717
Query 718 AGCAACGACAGAATCAAGGCGTGTTACCACAAGGTGGAGATGGAAAGCGTGGAAATGAGG 777
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 718 AGCAACGACAGAATCAAGGCGTGTTACCACAAGGTGGAGATGGAGAGCGTGGAAATGAGG 777
Query 778 TACTCGTTAGGGTTCTTTTCGTTCCAAAAAGGGGTGATATCGACACCGGAAGAAATGGTG 837
||||||||||||||||||||||||||| ||||| ||||||||||||||||||| ||||||
Sbjct 778 TACTCGTTAGGGTTCTTTTCGTTCCAAGAAGGGATGATATCGACACCGGAAGAGATGGTG 837
Query 838 GACAAGGACCATCCTTTAGCGTACAAGCCC-TTTCACCATGATGGACTTCTTGAGTACTA 896
|||||||||||||||||||||||||| ||| ||||||||||| |||||||||||||||||
Sbjct 838 GACAAGGACCATCCTTTAGCGTACAA-CCCATTTCACCATGACGGACTTCTTGAGTACTA 896
Query 897 TGAAACATTGGGAGCT-CATCTCAAGGCTCATCGTACCATGACCAAGGCCTT-TTGTGGC 954
||||||||||| || | |||||||||||||| ||||||||||||||||| || |||||||
Sbjct 897 TGAAACATTGG-AGGTTCATCTCAAGGCTCACCGTACCATGACCAAGGC-TTATTGTGGC 954
Query 955 ATCCCA 960
||||||
Sbjct 955 ATCCCA 960
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47421034768
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5