BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg911368
Length=744
Score E
Sequences producing significant alignments: (Bits) Value
AT1G15620.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 846 0.0
AT1G15640.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 544 6e-154
> AT1G15620.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT1G15640.1);
Has 125 Blast hits to 124 proteins in 14 species: Archae -
0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 125; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:5373504-5374575
FORWARD LENGTH=886
Length=886
Score = 846 bits (458), Expect = 0.0
Identities = 586/648 (90%), Gaps = 8/648 (1%)
Strand=Plus/Plus
Query 1 ATGGATGG-CCCTCTGTTGACTAAGGGTGAGCACAACGTCGACGACGTTACAACCCATGG 59
||||| || |||| |||||||| || ||||||||| |||||| |||||||||| ||||||
Sbjct 50 ATGGA-GGACCCTTTGTTGACTCAGAGTGAGCACATCGTCGATGACGTTACAATCCATGG 108
Query 60 CGATTCTTCCTCAAATGAAGAGCACATCGTCGATGTTACAACGAACGACGATTCTTCATC 119
||||||||| ||||||||||||||||||||||| |||||||| || | | || |||||||
Sbjct 109 CGATTCTTCTTCAAATGAAGAGCACATCGTCGACGTTACAACCAATGGCAATCCTTCATC 168
Query 120 TGCTGATGCGCAAACACCTCATGAGGATGTTCAATGGAGTGTTGTATTTACGTTTAGAAA 179
||||||| | ||| ||| ||||||| ||| |||||||||| | ||||||| |||| |
Sbjct 169 AGCTGATGAGAAAAGACCGCATGAGGGTGTCCAATGGAGTGATATATTTACATTTACCAC 228
Query 180 TGTTTTG-ATTTTGGTCGAGTTTGTTGTGGCTTTGGTCCAGATTGTTGCAGCCATTGTTG 238
|| |||| |||||||||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct 229 TG-TTTGTATTTTGGTCGAGTTTGTTGTGGCTTTAGTCCAGATTGTTGCCGCCATTGTTG 287
Query 239 TTCTTACTCTGACAAAAGATGAACAACCTCCACAAAAAATGTTTCCTACACTGATTCTCA 298
|||| |||||| ||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 288 TTCTGACTCTGGCAAAAGATGAACAACCTCCACAAAAAATGTTTCCTACACTGATCCTCA 347
Query 299 GTTATACCGGTTGCTGTATTGCCGCACTCCCTATTCTAGGTTTGCGTTTCTGGCAGTATT 358
||||||||||||||||||||||| ||||||||||||||||||||||||||||||| | ||
Sbjct 348 GTTATACCGGTTGCTGTATTGCCACACTCCCTATTCTAGGTTTGCGTTTCTGGCATTCTT 407
Query 359 ACCGAAATGTTAGCTCAGAGACAAGAATCTACGAGGTGGTGGACAATTTGAAAAAGATTC 418
|||||| ||||||| |||||||||||||||||||||||||||||| |||||||||||| |
Sbjct 408 ACCGAAGTGTTAGCACAGAGACAAGAATCTACGAGGTGGTGGACATTTTGAAAAAGATGC 467
Query 419 TTGAATATTTCTTCGTGGGTTGGGTTGTGGTGCTTTTCTGGCATCTTATCAACAACTCAG 478
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 468 TTGAATATTTCTTCGTGGGTTGGGTTGTGGTGCTTTTATGGCATCTTATCAACAACTCAT 527
Query 479 CATCTCTAGATATTGCGACGCAACAGTTATGGTTATGTATGGCTTTCCTTGCTATCAGCT 538
||||| |||||| | | ||||||||||| |||||||||||| ||||||||||||||||||
Sbjct 528 CATCTATAGATAATACTACGCAACAGTTCTGGTTATGTATGACTTTCCTTGCTATCAGCT 587
Query 539 GCATTCTACATGTGT-TTCGTAATCTCCCCTGTGCGGCGA-TTTGTTTTCTGTATCCTAT 596
||||||||||||| | ||||||||||||||||||||| || |||||||||||||||||||
Sbjct 588 GCATTCTACATGT-TCTTCGTAATCTCCCCTGTGCGG-GAGTTTGTTTTCTGTATCCTAT 645
Query 597 GATACTACGTCTTACCCAGTCTATAGACTTCTTTGATGGCATTACTGA 644
||||||| |||| |||| || ||||||||| ||| || |||||||||
Sbjct 646 GATACTATATCTTTCCCAATCGATAGACTTCGTTGGTGACATTACTGA 693
> AT1G15640.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT1G15620.1);
Has 154 Blast hits to 146 proteins in 13 species: Archae -
0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 154; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:5378886-5380139
FORWARD LENGTH=1071
Length=1071
Score = 544 bits (294), Expect = 6e-154
Identities = 500/595 (84%), Gaps = 31/595 (5%)
Strand=Plus/Plus
Query 158 GTGTTGTATTTACGTTTAGAAATGTTTTGATTTTGGTCGAGTTTGTTGTGGCTTTGGTCC 217
||| || |||||| | ||| |||||| | || |||||||||||||| || ||||| |||
Sbjct 388 GTGATGGATTTACATCTAGTCATGTTTGGGTTATGGTCGAGTTTGTTTTGACTTTGCTCC 447
Query 218 AGATTGTTGCAGCCATTGTTGTTCTTACTCTGACAAAAGATG-AACAACCTCCACAAAAA 276
|| ||||||||||||||| ||| || |||||||||||||||| ||| | |||||| |||
Sbjct 448 AGGTTGTTGCAGCCATTGCTGTCCTGACTCTGACAAAAGATGAAAC-AGATCCACAGAAA 506
Query 277 ATGTTTCCTACACTGATTC-TCAGTTATACCGGTTGCTGTATTGCCGCACTCCCTATTCT 335
|||||| |||||||| || || ||||||||||| ||||||||| || |||| ||||||
Sbjct 507 GTGTTTCGTACACTGA-TCATCTGTTATACCGGTGGCTGTATTGTCGTGCTCCTTATTCT 565
Query 336 AGGTTTGCG-TTTCTGGCAGTATTACCGAAATGTTAGCTCAGAGACAAGAATCTACGAGG 394
||||||| | ||||||| | ||| | || | | | | |||| |||||||||
Sbjct 566 AGGTTTG-GATTTCTGG--G-ATT------A--TT-G--C-G-G--AAGATTCTACGAGG 606
Query 395 TGGTGGACAATTTGAAAAAGATTCTTGAATATTTCTTCGTGGGTTGGGTTGTGGTGCTTT 454
|| |||| |||||||||||||| ||||| ||||||||||||||||||||||||||| |||
Sbjct 607 TGATGGAGAATTTGAAAAAGATGCTTGACTATTTCTTCGTGGGTTGGGTTGTGGTG-TTT 665
Query 455 TC-TGGCATCTTATCAACAACTCAGCATCTCTAGATATTGCGACGCAACAGTTA-TGGTT 512
|| ||||||||||| ||||||||| |||||| ||||| ||| || |||||| || |||||
Sbjct 666 TCATGGCATCTTATAAACAACTCATCATCTCCAGATAATGCTACACAACAG-TACTGGTT 724
Query 513 ATGTATGGCTTTCCTTGCTATCAGCTGCATTCTACATGTGTTTCGTAATCTCCCCTGTGC 572
||||||||||||||||| | |||| ||||||||||||||| ||| |||||||||||| ||
Sbjct 725 ATGTATGGCTTTCCTTGTTGTCAGTTGCATTCTACATGTGCTTCCTAATCTCCCCTGCGC 784
Query 573 GGCGATTTGTTTTCTGTATCCTATGATACTACGTCTTACCCAGTCTATAGACTTCTTTGA 632
|||| ||||||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct 785 GGCGGCTTGTTTTCTATATCCTATGATACTTCGTCTTACCCAGTCTATAGACTTCTTTGA 844
Query 633 TGGCATTACTGAAAAAATAGAGGGCATTAACTGGACAATCGCTGTATACATT---GGAAT 689
|| |||||||||||| ||||||| |||||||||| |||| ||||||| || |||||
Sbjct 845 TGACATTACTGAAAAGATAGAGGACATTAACTGGTTAATCTTTGTATACTTTTTTGGAAT 904
Query 690 CTTTTCCTGCATTCTCTGGTGCATTACCAGTTGTTGCAGTAGATTATGTAGATAA 744
||| ||||||||| |||| |||||| | ||||||||| |||||||||||||||
Sbjct 905 CTTCTCCTGCATTATCTGTTGCATTTTTACTTGTTGCAGCAGATTATGTAGATAA 959
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36118351693
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5