BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg911368 Length=744 Score E Sequences producing significant alignments: (Bits) Value AT1G15620.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 846 0.0 AT1G15640.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 544 6e-154 > AT1G15620.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G15640.1); Has 125 Blast hits to 124 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 125; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:5373504-5374575 FORWARD LENGTH=886 Length=886 Score = 846 bits (458), Expect = 0.0 Identities = 586/648 (90%), Gaps = 8/648 (1%) Strand=Plus/Plus Query 1 ATGGATGG-CCCTCTGTTGACTAAGGGTGAGCACAACGTCGACGACGTTACAACCCATGG 59 ||||| || |||| |||||||| || ||||||||| |||||| |||||||||| |||||| Sbjct 50 ATGGA-GGACCCTTTGTTGACTCAGAGTGAGCACATCGTCGATGACGTTACAATCCATGG 108 Query 60 CGATTCTTCCTCAAATGAAGAGCACATCGTCGATGTTACAACGAACGACGATTCTTCATC 119 ||||||||| ||||||||||||||||||||||| |||||||| || | | || ||||||| Sbjct 109 CGATTCTTCTTCAAATGAAGAGCACATCGTCGACGTTACAACCAATGGCAATCCTTCATC 168 Query 120 TGCTGATGCGCAAACACCTCATGAGGATGTTCAATGGAGTGTTGTATTTACGTTTAGAAA 179 ||||||| | ||| ||| ||||||| ||| |||||||||| | ||||||| |||| | Sbjct 169 AGCTGATGAGAAAAGACCGCATGAGGGTGTCCAATGGAGTGATATATTTACATTTACCAC 228 Query 180 TGTTTTG-ATTTTGGTCGAGTTTGTTGTGGCTTTGGTCCAGATTGTTGCAGCCATTGTTG 238 || |||| |||||||||||||||||||||||||| |||||||||||||| |||||||||| Sbjct 229 TG-TTTGTATTTTGGTCGAGTTTGTTGTGGCTTTAGTCCAGATTGTTGCCGCCATTGTTG 287 Query 239 TTCTTACTCTGACAAAAGATGAACAACCTCCACAAAAAATGTTTCCTACACTGATTCTCA 298 |||| |||||| ||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 288 TTCTGACTCTGGCAAAAGATGAACAACCTCCACAAAAAATGTTTCCTACACTGATCCTCA 347 Query 299 GTTATACCGGTTGCTGTATTGCCGCACTCCCTATTCTAGGTTTGCGTTTCTGGCAGTATT 358 ||||||||||||||||||||||| ||||||||||||||||||||||||||||||| | || Sbjct 348 GTTATACCGGTTGCTGTATTGCCACACTCCCTATTCTAGGTTTGCGTTTCTGGCATTCTT 407 Query 359 ACCGAAATGTTAGCTCAGAGACAAGAATCTACGAGGTGGTGGACAATTTGAAAAAGATTC 418 |||||| ||||||| |||||||||||||||||||||||||||||| |||||||||||| | Sbjct 408 ACCGAAGTGTTAGCACAGAGACAAGAATCTACGAGGTGGTGGACATTTTGAAAAAGATGC 467 Query 419 TTGAATATTTCTTCGTGGGTTGGGTTGTGGTGCTTTTCTGGCATCTTATCAACAACTCAG 478 ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 468 TTGAATATTTCTTCGTGGGTTGGGTTGTGGTGCTTTTATGGCATCTTATCAACAACTCAT 527 Query 479 CATCTCTAGATATTGCGACGCAACAGTTATGGTTATGTATGGCTTTCCTTGCTATCAGCT 538 ||||| |||||| | | ||||||||||| |||||||||||| |||||||||||||||||| Sbjct 528 CATCTATAGATAATACTACGCAACAGTTCTGGTTATGTATGACTTTCCTTGCTATCAGCT 587 Query 539 GCATTCTACATGTGT-TTCGTAATCTCCCCTGTGCGGCGA-TTTGTTTTCTGTATCCTAT 596 ||||||||||||| | ||||||||||||||||||||| || ||||||||||||||||||| Sbjct 588 GCATTCTACATGT-TCTTCGTAATCTCCCCTGTGCGG-GAGTTTGTTTTCTGTATCCTAT 645 Query 597 GATACTACGTCTTACCCAGTCTATAGACTTCTTTGATGGCATTACTGA 644 ||||||| |||| |||| || ||||||||| ||| || ||||||||| Sbjct 646 GATACTATATCTTTCCCAATCGATAGACTTCGTTGGTGACATTACTGA 693 > AT1G15640.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G15620.1); Has 154 Blast hits to 146 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 154; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:5378886-5380139 FORWARD LENGTH=1071 Length=1071 Score = 544 bits (294), Expect = 6e-154 Identities = 500/595 (84%), Gaps = 31/595 (5%) Strand=Plus/Plus Query 158 GTGTTGTATTTACGTTTAGAAATGTTTTGATTTTGGTCGAGTTTGTTGTGGCTTTGGTCC 217 ||| || |||||| | ||| |||||| | || |||||||||||||| || ||||| ||| Sbjct 388 GTGATGGATTTACATCTAGTCATGTTTGGGTTATGGTCGAGTTTGTTTTGACTTTGCTCC 447 Query 218 AGATTGTTGCAGCCATTGTTGTTCTTACTCTGACAAAAGATG-AACAACCTCCACAAAAA 276 || ||||||||||||||| ||| || |||||||||||||||| ||| | |||||| ||| Sbjct 448 AGGTTGTTGCAGCCATTGCTGTCCTGACTCTGACAAAAGATGAAAC-AGATCCACAGAAA 506 Query 277 ATGTTTCCTACACTGATTC-TCAGTTATACCGGTTGCTGTATTGCCGCACTCCCTATTCT 335 |||||| |||||||| || || ||||||||||| ||||||||| || |||| |||||| Sbjct 507 GTGTTTCGTACACTGA-TCATCTGTTATACCGGTGGCTGTATTGTCGTGCTCCTTATTCT 565 Query 336 AGGTTTGCG-TTTCTGGCAGTATTACCGAAATGTTAGCTCAGAGACAAGAATCTACGAGG 394 ||||||| | ||||||| | ||| | || | | | | |||| ||||||||| Sbjct 566 AGGTTTG-GATTTCTGG--G-ATT------A--TT-G--C-G-G--AAGATTCTACGAGG 606 Query 395 TGGTGGACAATTTGAAAAAGATTCTTGAATATTTCTTCGTGGGTTGGGTTGTGGTGCTTT 454 || |||| |||||||||||||| ||||| ||||||||||||||||||||||||||| ||| Sbjct 607 TGATGGAGAATTTGAAAAAGATGCTTGACTATTTCTTCGTGGGTTGGGTTGTGGTG-TTT 665 Query 455 TC-TGGCATCTTATCAACAACTCAGCATCTCTAGATATTGCGACGCAACAGTTA-TGGTT 512 || ||||||||||| ||||||||| |||||| ||||| ||| || |||||| || ||||| Sbjct 666 TCATGGCATCTTATAAACAACTCATCATCTCCAGATAATGCTACACAACAG-TACTGGTT 724 Query 513 ATGTATGGCTTTCCTTGCTATCAGCTGCATTCTACATGTGTTTCGTAATCTCCCCTGTGC 572 ||||||||||||||||| | |||| ||||||||||||||| ||| |||||||||||| || Sbjct 725 ATGTATGGCTTTCCTTGTTGTCAGTTGCATTCTACATGTGCTTCCTAATCTCCCCTGCGC 784 Query 573 GGCGATTTGTTTTCTGTATCCTATGATACTACGTCTTACCCAGTCTATAGACTTCTTTGA 632 |||| ||||||||| |||||||||||||| ||||||||||||||||||||||||||||| Sbjct 785 GGCGGCTTGTTTTCTATATCCTATGATACTTCGTCTTACCCAGTCTATAGACTTCTTTGA 844 Query 633 TGGCATTACTGAAAAAATAGAGGGCATTAACTGGACAATCGCTGTATACATT---GGAAT 689 || |||||||||||| ||||||| |||||||||| |||| ||||||| || ||||| Sbjct 845 TGACATTACTGAAAAGATAGAGGACATTAACTGGTTAATCTTTGTATACTTTTTTGGAAT 904 Query 690 CTTTTCCTGCATTCTCTGGTGCATTACCAGTTGTTGCAGTAGATTATGTAGATAA 744 ||| ||||||||| |||| |||||| | ||||||||| ||||||||||||||| Sbjct 905 CTTCTCCTGCATTATCTGTTGCATTTTTACTTGTTGCAGCAGATTATGTAGATAA 959 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 36118351693 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5