BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg911380
Length=252
Score E
Sequences producing significant alignments: (Bits) Value
AT1G15757.1 | Symbols: | Molecular chaperone Hsp40/DnaJ family... 350 5e-96
> AT1G15757.1 | Symbols: | Molecular chaperone Hsp40/DnaJ family
protein | chr1:5424242-5424576 REVERSE LENGTH=252
Length=252
Score = 350 bits (189), Expect = 5e-96
Identities = 233/254 (92%), Gaps = 4/254 (2%)
Strand=Plus/Plus
Query 1 ATGGCTATCACTAAAAAGAATTTGATAGCATTTGTTCTCGCCATTCTGC-TTGTTATATC 59
||||||||||| |||||||||||||||||||||||| || ||||||| | ||||||||||
Sbjct 1 ATGGCTATCACCAAAAAGAATTTGATAGCATTTGTTTTCACCATTCT-CTTTGTTATATC 59
Query 60 TTATGTTCATTGTCGTACAACATCTGATATTGTTTCTGGTTTTGGAATAAAAGAGGATGA 119
|||||||||||||||| ||||||||||||| |||||||||| ||||||||||||||||||
Sbjct 60 TTATGTTCATTGTCGTTCAACATCTGATATCGTTTCTGGTTCTGGAATAAAAGAGGATGA 119
Query 120 TCATGTATGCTTCAATACAAGTCCGTGTTTGCCTGAACAAGGAGGGGAAAAAGGCTGCAT 179
|||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||
Sbjct 120 ACATGTATGCTTCAAAACAAGTCCGTGTTTGCCTGAAGTCGGAGGGGAAAAAGGCTGCAT 179
Query 180 TGCGTTTTGTACAAGACA-GAAGTTTACAACAGGCCATTGTCTTAATTCCGAATTATGTT 238
|||||||||| ||||| | ||||||||||||||||| ||||||| ||||| | ||||||
Sbjct 180 TGCGTTTTGTTCAAGA-ATGAAGTTTACAACAGGCCTTTGTCTTGGTTCCGTAGTATGTT 238
Query 239 GTTGTTACACTTAA 252
||||||||||||||
Sbjct 239 GTTGTTACACTTAA 252
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 11461046772
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5