BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg911407
Length=2217
Score E
Sequences producing significant alignments: (Bits) Value
AT1G15990.1 | Symbols: ATCNGC7, CNGC7 | cyclic nucleotide gated... 3452 0.0
AT1G19780.1 | Symbols: ATCNGC8, CNGC8 | cyclic nucleotide gated... 2085 0.0
AT1G15980.1 | Symbols: NDF1, NDH48 | NDH-dependent cyclic elect... 100 5e-20
> AT1G15990.1 | Symbols: ATCNGC7, CNGC7 | cyclic nucleotide gated
channel 7 | chr1:5491304-5493772 REVERSE LENGTH=2130
Length=2130
Score = 3452 bits (1869), Expect = 0.0
Identities = 2043/2130 (96%), Gaps = 0/2130 (0%)
Strand=Plus/Plus
Query 88 ATGATGATGCAGCGAAACTGTTTCGGATTTAACCTAAAGAACCGAGGAGGTGAAAAGAAG 147
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGATGATGCAGAGAAACTGTTTCGGATTTAACCTAAAGAACCGAGGAGGTGAAAAGAAG 60
Query 148 AAAGCATCCAAATCTTTCAGGGAAGGAGTCaaaaaaaTCAGATCAGAAGGTCTAATAACC 207
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 61 AAAGCATCCAAATCTTTCAGGGAAGGAGTTAAAAAAATCAGATCAGAAGGTCTAATAACC 120
Query 208 ATCGGTAAATCGGTAACAAGAGCAGTTTTTCCAGAAGATTTAAGAATAACCGAGAAGAAA 267
||||||||||| || |||||||| |||||||||||||| ||||||||||| |||||||||
Sbjct 121 ATCGGTAAATCCGTTACAAGAGCGGTTTTTCCAGAAGACTTAAGAATAACAGAGAAGAAA 180
Query 268 ATCTTTGATCCTCAAGACAAAACACTTCTCATATGGAACAGATTGTTCGTCATTTCGTGT 327
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 181 ATCTTTGATCCTCAAGACAAAACACTTCTCGTATGGAACAGATTGTTCGTCATTTCGTGT 240
Query 328 ATTTTAGCTGTCTCAGTTGATCCATTGTTCTTCTATCTTCCCATTGTCGATAATTCCGGA 387
|||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 241 ATTTTAGCTGTCTCTGTTGATCCTTTGTTCTTCTATCTTCCCATTGTCGATAATTCCGGA 300
Query 388 AGCAGCTGTATAGGGATTGACACGAAACTAGCTGTTACAACGACGACCCTTAGAACCATC 447
|||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct 301 AGCAGCTGTATAGGGATTGATACGAAACTAGCTGTTACAACGACGACTCTTAGAACCATT 360
Query 448 GTTGATGTCTTTTACTTAACTAGAATGGCTCTTCAGTTCCGAACAGCTTATATAGCTCCT 507
||||| || ||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 361 GTTGACGTTTTTTACTTAACTAGAATGGCTCTTCAGTTTCGTACAGCTTATATAGCTCCT 420
Query 508 TCCTCTCGTGTGTTTGGTCGTGGTGAGCTTGTGATTGATCCTGCAAAGATCGCGGAACGG 567
|| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 421 TCTTCTCGTGTGTTTGGTCGTGGTGAGCTTGTGATTGATCCTGCAAAGATCGCTGAACGC 480
Query 568 TATTTAACCCGTTATTTCATCGTCGATTTCCTAGCAGTGCTTCCTTTACCGCAGATTGCG 627
|||||||||||||||||| |||||||||| || |||||||| |||||||||||||||||
Sbjct 481 TATTTAACCCGTTATTTCGTCGTCGATTTTCTTGCAGTGCTGCCTTTACCGCAGATTGCA 540
Query 628 GTATGGAAGTTTCTTCACGGGTCTAAAGGATCAGATGTGCTACCGACGAAAACGGCATTG 687
|| ||||||||||||||||||||||||||||| |||||| |||| |||||||||||||||
Sbjct 541 GTGTGGAAGTTTCTTCACGGGTCTAAAGGATCGGATGTGTTACCAACGAAAACGGCATTG 600
Query 688 TTGTACATTGTAATCGTGCAGTATATTCCGAGATTCATGAGGTTTATTCCGTTAACATCA 747
||| |||||||||| ||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 601 TTGAACATTGTAATTGTGCAGTATATTCCGAGATTCGTGAGGTTTATTCCGTTAACATCA 660
Query 748 GAACTGAAGAAAACTGCTGGAGCTTTTGCTGAAGGAGCGTGGGCTGGTGCTGCTTATTAT 807
|| ||||||||||||| ||||||||||| |||||||| |||||||||||||||||||||
Sbjct 661 GAGTTGAAGAAAACTGCAGGAGCTTTTGCCGAAGGAGCTTGGGCTGGTGCTGCTTATTAT 720
Query 808 CTCCTCTGGTATATGCTTGCAAGCCACATAACTGGAGCGTTTTGGTACATGTTGTCAGTG 867
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 CTTCTCTGGTATATGCTTGCAAGCCACATAACTGGAGCGTTTTGGTACATGTTGTCAGTG 780
Query 868 GAACGTAACGATACTTGTTGGAGATTTGCTTGTAAGGTCCAGCCAGATCCGCGACTCTGT 927
|| |||||||||||||||||||||||||| ||||| || |||||||||||||||||||||
Sbjct 781 GAGCGTAACGATACTTGTTGGAGATTTGCGTGTAAAGTTCAGCCAGATCCGCGACTCTGT 840
Query 928 GTTCAGATTTTGTATTGTGGGAGTAAATTTGTGAGCAATCGCGAAACTGAATGGATCAAA 987
||||||||| |||||||||||| |||||||||||||| | | ||||||||||||||||||
Sbjct 841 GTTCAGATTCTGTATTGTGGGACTAAATTTGTGAGCAGTGGAGAAACTGAATGGATCAAA 900
Query 988 ACAGTCCCTGAGCTTCTCAAGAGCAATTGTTCCGCTAAAGCAGATGATTCAAAGTTTAAC 1047
||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct 901 ACAGTCCCTGAGCTTCTTAAGAGCAATTGTTCTGCTAAAGCAGATGATTCAAAGTTTAAC 960
Query 1048 TATGGGATATATGGTCAGGCAATATCTTCAGGCATTGTATCATCAACAACATTTTTCTCC 1107
||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 961 TATGGGATATACGGTCAGGCTATATCTTCAGGCATTGTATCATCAACAACATTTTTCTCC 1020
Query 1108 AAATTCTGTTATTGTCTATGGTGGGGTCTTCAGAATCTCAGCACGTTAGGTCAAGGACTG 1167
|| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 1021 AAGTTCTGTTATTGTCTATGGTGGGGTCTTCAAAATCTCAGCACGTTAGGTCAAGGGCTG 1080
Query 1168 CAAACAAGTACATTTCCAGGAGAGGTTTTGTTTTCCATTGCGATTGCTATAGCTGGTCTT 1227
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1081 CAGACAAGTACATTTCCAGGAGAGGTTTTGTTTTCCATTGCGATTGCTATAGCTGGGCTT 1140
Query 1228 CTTCTTTTCGCGCTTCTTATTGGGAATATGCAGACTTATCTTCAGTCACTTACTGTTCGT 1287
||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 1141 CTTCTTTTCGCGCTTCTCATCGGGAATATGCAGACTTATCTTCAGTCACTTACTGTTCGT 1200
Query 1288 CTCGAGGAAATGAGGATTAAAAGACGCGACTCGGAACAGTGGATGCATCACAGGTCCCTT 1347
||||||||||||||||| |||||||| ||||| ||||||||||||||||||||||| |||
Sbjct 1201 CTCGAGGAAATGAGGATCAAAAGACGTGACTCAGAACAGTGGATGCATCACAGGTCACTT 1260
Query 1348 CCACAAAATTTGAGGGAAAGAGTCAGACGCTATGATCAATACAAATGGTTAGAGACAAGA 1407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1261 CCACAAAATTTGAGGGAAAGAGTCAGACGCTATGATCAATACAAATGGTTAGAGACAAGA 1320
Query 1408 GGTGTAGACGAAGAAAACATAGTTCAGAGTTTACCTAAGGATCTCAGGAGAGACATCAAA 1467
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1321 GGTGTAGACGAAGAAAACATAGTTCAGAGTTTACCTAAGGATCTCAGAAGAGACATCAAA 1380
Query 1468 CGCCATCTCTGTCTCAATTTAGTTAGGAGGGTTCCTCTGTTTGCTAATATGGATGAAAGA 1527
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1381 CGCCATCTCTGTCTGAATTTAGTTAGGAGGGTTCCTCTGTTTGCTAATATGGATGAAAGA 1440
Query 1528 TTACTTGACGCGATCTGTGAGAGATTAAAGCCGAGTCTTTACACGGAAAGCACTTACATT 1587
||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1441 TTACTTGACGCAATCTGTGAGAGATTAAAGCCGAGTCTTTTCACGGAAAGCACTTACATT 1500
Query 1588 GTGCGTGAAGGAGACCCGGTTAACGAAATGATGTTCATAATCCGAGGCCGGTTAGAGAGT 1647
||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct 1501 GTGCGTGAAGGAGACCCCGTTAACGAAATGATGTTCATAATCCGAGGCCGGTTAGAAAGT 1560
Query 1648 GTAACAACAGATGGAGGACGAAGCGGTTTCTTCAACAGAGGGTTATTGAAAGAAGGAGAC 1707
|||||||||||||| ||| ||||||||||||||||||||||||| || ||||||||||||
Sbjct 1561 GTAACAACAGATGGGGGAAGAAGCGGTTTCTTCAACAGAGGGTTGTTAAAAGAAGGAGAC 1620
Query 1708 TTTTGTGGTGAAGAGCTTCTGACATGGGCACTTGACCCTAAAGCAGGCTCAAACTTACCT 1767
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1621 TTTTGTGGTGAAGAGCTTCTGACATGGGCTCTTGACCCTAAAGCAGGCTCAAACTTACCT 1680
Query 1768 TCTTCCACAAGAACAGTGAAGGCTCTAACTGAAGTAGAGGCTTTCGCTCTTGAAGCTGAA 1827
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1681 TCTTCCACAAGAACAGTGAAGGCTCTGACTGAAGTAGAGGCTTTCGCTCTTGAAGCTGAA 1740
Query 1828 GAGCTGAAGTTTGTAGCAAGTCAGTTTAGGAGACTTCATAGTCGACAGGTTCAACAAACA 1887
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1741 GAGCTGAAGTTTGTAGCAAGTCAGTTTAGGAGACTTCATAGTCGACAGGTTCAACAAACA 1800
Query 1888 TTTAGGTTTTACTCTCAGCAATGGAGAACTTGGGCTTCTTGCTTCATCCAAGCTGCTTGG 1947
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1801 TTTAGGTTTTACTCTCAGCAATGGAGAACTTGGGCTTCTTGCTTCATCCAAGCTGCTTGG 1860
Query 1948 CGTCGCTATTCAAGAAGGAAAAACGCTGAACTGAGGCGGATagaagaagaagaagaagaa 2007
|||||||||||||||||||||||||||||| |||| ||||| |||||| |||||||||||
Sbjct 1861 CGTCGCTATTCAAGAAGGAAAAACGCTGAATTGAGACGGATTGAAGAAAAAGAAGAAGAA 1920
Query 2008 ATGGGTTATGAATATGAGTATGATGAAGAAAGTGACAAGAGGCCTATGGTTATCACAAGA 2067
||||||||||| |||| |||||||| || ||||||||||||||||||||||||||||||
Sbjct 1921 TTGGGTTATGAAGATGAATATGATGATGAGAGTGACAAGAGGCCTATGGTTATCACAAGA 1980
Query 2068 ACTGAGTCTTCTTCTAGACTGCGTTCAACGATATTTGCATCAAGATTTGCTGCTAATGCA 2127
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1981 AGTGAGTCTTCTTCTAGACTGCGTTCAACGATATTTGCATCAAGATTTGCTGCTAATGCA 2040
Query 2128 TTGAAAGGGCACAGACTAAGGAGCTCAGAGAGTTCAAAGAGCTTGATGAATCTGCAAAAG 2187
||||||||||||||||| |||||||||||||||||||||| |||||| ||||||||||||
Sbjct 2041 TTGAAAGGGCACAGACTTAGGAGCTCAGAGAGTTCAAAGACCTTGATAAATCTGCAAAAG 2100
Query 2188 CCTCCGGAACCTGATTTTGATGCTGAATAA 2217
||||||||||||||||||||||||||||||
Sbjct 2101 CCTCCGGAACCTGATTTTGATGCTGAATAA 2130
> AT1G19780.1 | Symbols: ATCNGC8, CNGC8 | cyclic nucleotide gated
channel 8 | chr1:6833885-6836578 REVERSE LENGTH=2262
Length=2262
Score = 2085 bits (1129), Expect = 0.0
Identities = 1915/2280 (84%), Gaps = 111/2280 (5%)
Strand=Plus/Plus
Query 1 ATGTACAAATCCCAATACATTAGCGGCCAGAGAGAAAAATTCGTTAGGTTAGATGATATA 60
||||||||||| ||||| || || ||||| |||||||||||||| || |||||||||| |
Sbjct 1 ATGTACAAATCTCAATATATAAGTGGCCATAGAGAAAAATTCGTAAGATTAGATGATACA 60
Query 61 GATTC-A-AG-TTC--T-TC-TC--CTGCGACTGGAATGATGATGCAGCGAAAC-TGTTT 110
||||| | | ||| | || || ||| || ||||||| | | |||| | | |||||
Sbjct 61 GATTCGAGGGTTTCAATGTCATCTAATGCTACGGGAATGA--A-GAAGCG-ATCATGTTT 116
Query 111 CGGA---TTTAACCTAAAGAACCGAGGAGG-TGAAA-A-GAAGAA-AGCATCCAAATC-T 162
||| |||||| ||| | || ||||| |||| | ||||| | |||| ||||| |
Sbjct 117 TGGATTGTTTAACGTAACTAGTCGTGGAGGAGGAAAGACAAAGAACA-CATCAAAATCAT 175
Query 163 TTCAGGGAAGGAGTCaaaaaaaTCAGATCAGAAGGTCTAATAACCATCGG----T-A--- 214
||| | ||||| || |||||| ||||||| ||||||| ||| ||||| | |
Sbjct 176 TTC-GAGAAGGTGT---TAAAATCGGATCAGAGGGTCTAAAAACGATCGGAAAATCATTC 231
Query 215 A-ATC--G-GTAACAAGAGCAGTTTTTCCAGAAGATTTAAGAATAACCGAGAAGAAAATC 270
| ||| | ||||||||||| ||||| || |||||| ||||| | ||||||||||||||
Sbjct 232 ACATCAGGTGTAACAAGAGCTGTTTTCCCTGAAGATCTAAGAGTCTCCGAGAAGAAAATC 291
Query 271 TTTGATCCTCAAGACAAAACACTTCTCA-TATGGAACAGATTGTTCGTCATTTCGTGTAT 329
|||||||||||||||||||||||| | | ||||||||||| |||| || || || || ||
Sbjct 292 TTTGATCCTCAAGACAAAACACTT-TTATTATGGAACAGAATGTTTGTTATCTCTTGCAT 350
Query 330 T-TTAGCTGTCTCAGTTGATCCAT-TGTTCTTCTATCTTCCC-ATTGTCGATAATTCCGG 386
| || |||||||| |||||||| | |||||||||||| |||| ||||||||||| | |
Sbjct 351 TCTT-GCTGTCTCTGTTGATCC-TCTGTTCTTCTATC-TCCCTATTGTCGATAACT-C-A 405
Query 387 AAGCAGCTGTATAGGGATTGACACGAAACTAGCTGTTACAACGACGACCCTTAGAACCAT 446
||| | ||| || ||||||||| | ||| ||||||| ||||| || || || ||||| ||
Sbjct 406 AAG-AACTGCATTGGGATTGACTCTAAATTAGCTGTGACAACTACTACTCTAAGAACGAT 464
Query 447 CGTTGATGTCTTTTA-CTTAACTA-GAATGGCTCTTCAGTTCCGAACAGCTTATATAGCT 504
| | ||||| ||||| ||| || | ||||||||||||||||||| || ||||| || |||
Sbjct 465 CATCGATGTTTTTTATCTT-AC-ACGAATGGCTCTTCAGTTCCGTACCGCTTACATTGCT 522
Query 505 CCTTCCTCTCGTGTGTTTGGTCGTGGTGAGCTTGTGATTGATCCTGCAAAGATCGCGGAA 564
||||| |||||||||||||| | |||||||||||||| || |||||||||||||| |||
Sbjct 523 CCTTCTTCTCGTGTGTTTGGAAGAGGTGAGCTTGTGATCGACCCTGCAAAGATCGCTGAA 582
Query 565 CGGTATTTAACCCGTTATTTCATCGTCGATTTCCTAGCAGTGCTTCCTTTACCGCAGATT 624
|||||||| || ||||||||||| ||||||||||| || || ||||||||||| ||||||
Sbjct 583 CGGTATTTGACTCGTTATTTCATTGTCGATTTCCTCGCGGTTCTTCCTTTACCTCAGATT 642
Query 625 GCGGTATGGAAGTTTCTTCACGGGTCTAAAGGATCAGATGTGCTACCGACGAAAAC-GGC 683
|| || ||||||||||||||||| ||||||||| ||||||| |||| || ||||| |||
Sbjct 643 GCTGTGTGGAAGTTTCTTCACGGATCTAAAGGAACAGATGTATTACCAAC-AAAACAGGC 701
Query 684 ATTGTTGTACATTGTAATCGTGCAGTATATTCCGAGATTCATGAGGTTTATTCCGTTAAC 743
| || ||||||| ||| ||||| || || |||||| | ||||||||||| |||||
Sbjct 702 GCTATTACACATTGTCATCACACAGTACATACCAAGATTCGTTAGGTTTATTCCATTAAC 761
Query 744 ATCAGAACTGAAGAAAACTGCTGGAGCTTTTGCTGAAGGAGCGTGGGCTGGTGCTGCTTA 803
||||| || |||||||| || |||||||| |||||||| || |||||||||||||||||
Sbjct 762 TTCAGAGCTCAAGAAAACAGCAGGAGCTTTCGCTGAAGGTGCTTGGGCTGGTGCTGCTTA 821
Query 804 TTATCTCCTCTGGTATATGCTTGCAAGCCACATAACTGGAGCGTTTTGGTACATGTTGTC 863
||| ||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 822 TTACCTCCTCTGGTATATGCTTGCAAGTCACATAACTGGAGCGTTCTGGTACATGTTGTC 881
Query 864 AGTGGAACGTAACGATACTTG-TTGGAGATTTGCTTGTAAGGTCCAGCCAGATCCGCGA- 921
|||||||||||||||||| || || ||||| |||||||| |||||||| ||||| | |
Sbjct 882 AGTGGAACGTAACGATACATGCTT-GAGATCCGCTTGTAAAGTCCAGCCTGATCC-CAAG 939
Query 922 CTCTGTGTTCAGATT-TTGTATTGTGGGAGTAAATTTGTGAGCAATCGCGAAACTGAATG 980
|||||||||||||| || |||||||| || ||||| |||||| ||||||||| || ||
Sbjct 940 GTCTGTGTTCAGATTCTT-TATTGTGGCAGCAAATTAATGAGCAGTCGCGAAACCGACTG 998
Query 981 GATCAAAACAGTCCCTGAGCTTCTCAAGAGCAATTGTTCCGCT-AAAGCAGATGATTC-A 1038
||||||| |||||||||| ||| | |||| ||||||||| ||| ||||| ||||| || |
Sbjct 999 GATCAAATCAGTCCCTGATCTTTTTAAGAACAATTGTTCTGCTAAAAGC-GATGAGTCTA 1057
Query 1039 AAGTTTAACTATGGGATATATGGTCAGGCAATATCTTCAGGCATTGTATCATCAACAACA 1098
|| || ||||| ||||| ||| | ||||| | ||||| || |||||||| || |||||
Sbjct 1058 AA-TTCAACTACGGGATCTATAGCCAGGCTGTGTCTTCCGGTATTGTATCTTCGACAACG 1116
Query 1099 TTTTTCTCCAAATTCTGTTATTGTCTATGGTGGGGTCTTCAGAATCTCAGCACGTTAGGT 1158
||||||||||| || ||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 1117 TTTTTCTCCAAGTTTTGTTATTGTCTATGGTGGGGTCTCCAAAATCTCAGCACGTTAGGT 1176
Query 1159 CAAGGACTGCAAACAAGTACATTTCCAGGAGAGGTTTTGTTTTCCATTGCGATTGCTATA 1218
||||| |||||||||||||||| ||||||||| ||||||||||| ||||| |||||| ||
Sbjct 1177 CAAGGGCTGCAAACAAGTACATATCCAGGAGAAGTTTTGTTTTCAATTGCAATTGCTGTA 1236
Query 1219 GCTGGTCTTCTTCTT-TTCGCGCTTCTTATTGGGAATATGCAGACTTATCTTCAGTCACT 1277
||||| |||||| || || || ||||| |||||||||||||| |||||||||||||||||
Sbjct 1237 GCTGGACTTCTT-TTGTTTGCTCTTCTCATTGGGAATATGCAAACTTATCTTCAGTCACT 1295
Query 1278 TACTGTTCGTC-TCGAGGAAATGAGGATTAAAAGACGCGACTCGGAACAGTGGATGCATC 1336
||| ||||| | | ||||||||||||||||||||||| || || ||||||||||||||||
Sbjct 1296 TACGGTTCG-CTTAGAGGAAATGAGGATTAAAAGACGTGATTCCGAACAGTGGATGCATC 1354
Query 1337 ACAGGTCCCTTCCACAAAATTTGAGGGAAAGAGTCAGACGCTATGATCAATACAAATGGT 1396
||||||| ||||||||||| |||||||| |||||||||| |||||||||||||||||||
Sbjct 1355 ACAGGTCACTTCCACAAAACCTGAGGGAACGAGTCAGACGTTATGATCAATACAAATGGT 1414
Query 1397 TAGAGACAAGAGGTGTAGACGAAGAAAACATAGTTCAGAGTTTACCTAAGGATCTCAGGA 1456
| || |||||||| || ||||||||||||||||| ||||||||||| || ||||| || |
Sbjct 1415 TGGAAACAAGAGGAGTCGACGAAGAAAACATAGTCCAGAGTTTACCAAAAGATCTTAGAA 1474
Query 1457 GAGACATCAAACGCCATCTCTGTCTCAATTTAGTTAGGAGGGTTCCTCTGTTTGCTAATA 1516
||||||||||||||||||||||||| ||||||||| | ||||||||||||||||||||||
Sbjct 1475 GAGACATCAAACGCCATCTCTGTCTAAATTTAGTTCGCAGGGTTCCTCTGTTTGCTAATA 1534
Query 1517 TGGATGAAAGATTACTTGACGCGATCTGTGAGAGATTAAAGCCGAGTCTTTACACGGAAA 1576
||||||| |||||||| ||||| || ||||||||| ||||||| ||||| ||||| || |
Sbjct 1535 TGGATGAGAGATTACTAGACGCAATATGTGAGAGACTAAAGCCAAGTCTATACACAGAGA 1594
Query 1577 GCACTTACATTGTGCGTGAAGGAGACCCGGTTAACGAAATGATGTTCATAATCCGAGGCC 1636
|||||||||| ||||| |||||||||||||||||||||||| | ||||||||||||||||
Sbjct 1595 GCACTTACATAGTGCGAGAAGGAGACCCGGTTAACGAAATGCTCTTCATAATCCGAGGCC 1654
Query 1637 GGTTAGAGAGTGTAACAACAGATGGAGGACGAAGCGGTTTCTTCAACAGAGGGTTATTGA 1696
||||||||||||||||||||||||| ||| ||||||||||||| |||||||| |||||||
Sbjct 1655 GGTTAGAGAGTGTAACAACAGATGGTGGAAGAAGCGGTTTCTTTAACAGAGGTTTATTGA 1714
Query 1697 AAGAAGGAGACTTTTGTGGTGAAGAGCTTCTGACATGGGCACTTGACCCTAAAGCAGGCT 1756
||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1715 AAGAAGGTGACTTTTGTGGTGAAGAGCTTCTGACTTGGGCACTTGACCCTAAAGCAGGCT 1774
Query 1757 CAAACTTACCTTCTTCCACAAGAACAGTGAAGGCTCTAACTGAAGTAGAGGCTTTCGCTC 1816
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1775 CAAACTTACCTTCTTCCACACGAACAGTGAAGGCTCTAACTGAAGTAGAGGCTTTCGCT- 1833
Query 1817 TT-GAAGCTGAAGAGCTGAAGTTTGTAGCAAGTCAGTTTAGGAGACTTCATAGTCGACAG 1875
|| ||||| |||||||| |||||||| || |||||||| ||| | ||||| ||||| |||
Sbjct 1834 TTAGAAGCGGAAGAGCTCAAGTTTGTGGCTAGTCAGTTCAGGCGTCTTCACAGTCGTCAG 1893
Query 1876 GTTCAACAAACATTT-AGGTTTTACTCTCAGCAATGGAGAACTTGGGCTTCTTGCTTCAT 1934
||||||||||| ||| |||||||||||||| |||||||| ||||||||| |||| |||||
Sbjct 1894 GTTCAACAAAC-TTTCAGGTTTTACTCTCAACAATGGAGGACTTGGGCTGCTTGTTTCAT 1952
Query 1935 CCAAGCTGCTTGGCGTCG-CTATTCAAGAAGGAAAAACGCTGAACTGAGGCGGATagaag 1993
|||||| ||||||||| | | ||| ||||||||||| ||| || || || || | |||||
Sbjct 1953 CCAAGCCGCTTGGCGTAGAC-ATTTAAGAAGGAAAATCGCAGAGCTTAGACGTAAAGAAG 2011
Query 1994 aagaagaagaagaaATGGGTTATGAATATGA-G--TATGATGAAGA-AAGTGACAAGAGG 2049
|||||||||||||||||| ||||||| |||| | ||| |||| || || | | | ||
Sbjct 2012 AAGAAGAAGAAGAAATGGATTATGAAGATGATGAATATTATGATGATAA-T-ATGGGTGG 2069
Query 2050 CCTATGGTTATCACAAGAACTGA--GT-CT-T-----C---TTCTAGACTGCGTTCAACG 2097
|||||||| || | || ||| || || | | ||||| | | ||||| |||
Sbjct 2070 --TATGGTTA-CA-AGGAG-TGATAGTTCTGTTGGATCAAGTTCTACATTACGTTCCACG 2124
Query 2098 ATATTTGCATCAAGATTTGCTGCTAATGCA-TTGAAAGGG-CACAGACTAAGGAGCTCA- 2154
||||||||||||||||||||||||| || || || ||| || | ||||||| | |||
Sbjct 2125 GTATTTGCATCAAGATTTGCTGCTAACGCGCTT-AA-GGGTCATAAACTAAGG-G-TCAC 2180
Query 2155 -GAGAGTTCAAAGAGCTTGATGAATCTG-CAAAAGCC-TCCGGAACCTGATTTTGATGCT 2211
|||||||||||||| || |||||| | |||| ||| || | ||||||| ||||| |||
Sbjct 2181 CGAGAGTTCAAAGAGTTTAATGAATTTAACAAA-GCCATCAG-AACCTGACTTTGAGGCT 2238
> AT1G15980.1 | Symbols: NDF1, NDH48 | NDH-dependent cyclic electron
flow 1 | chr1:5489298-5491363 FORWARD LENGTH=1566
Length=1566
Score = 100 bits (54), Expect = 5e-20
Identities = 58/60 (97%), Gaps = 0/60 (0%)
Strand=Plus/Minus
Query 2158 AGTTCAAAGAGCTTGATGAATCTGCAAAAGCCTCCGGAACCTGATTTTGATGCTGAATAA 2217
|||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1566 AGTTCAAAGACCTTGATAAATCTGCAAAAGCCTCCGGAACCTGATTTTGATGCTGAATAA 1507
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 109989394095
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5