BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg911413
Length=687
Score E
Sequences producing significant alignments: (Bits) Value
AT1G16040.1 | Symbols: | FUNCTIONS IN: molecular_function unkn... 898 0.0
> AT1G16040.1 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: GPI anchor biosynthetic process; LOCATED
IN: integral to membrane, endoplasmic reticulum membrane; EXPRESSED
IN: 24 plant structures; EXPRESSED DURING: 13 growth
stages; CONTAINS InterPro DOMAIN/s: GPI biosynthesis protein
Pig-F (InterPro:IPR009580); Has 280 Blast hits to 280 proteins
in 133 species: Archae - 0; Bacteria - 0; Metazoa - 113;
Fungi - 111; Plants - 44; Viruses - 0; Other Eukaryotes -
12 (source: NCBI BLink). | chr1:5504735-5506611 FORWARD LENGTH=848
Length=848
Score = 898 bits (486), Expect = 0.0
Identities = 627/693 (90%), Gaps = 18/693 (3%)
Strand=Plus/Plus
Query 1 ATGAAAGAGGCGAAGAAGAAGAAGAAGCCAGAAACCACTATTGGTGTGTCGATATCAGCT 60
||||||||||||||| |||||||||| ||||||| | | || || | |||||||| ||
Sbjct 13 ATGAAAGAGGCGAAGGAGAAGAAGAATCCAGAAATCTCCGTTAGTATCACGATATCAACT 72
Query 61 CT-GGGGGCTTTCT-CTGTTTATTTGATTACTGGGTTATCTCTGGCCGTCGGA-TTCTGG 117
| ||||||||| | |||||||| ||||||||||||||| |||| | ||||| |||
Sbjct 73 -TGGGGGGCTTT-TGCTGTTTATGTGATTACTGGGTTATTTCTGATCTTCGGATTTC-AC 129
Query 118 GTGGTCCGTAATATTTACTCTGTCGATCTCATTTCTGATCCATCTCTCACTCTGCGTCTC 177
||||||||||| | ||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 130 GTGGTCCGTAACAAATACTCTGTCGATCTCATTTCTGATCCAACTCTCACTCTGCGTCTC 189
Query 178 CTATGGATTATTGAGTTCCCGATCGTGGTAATCATCTACAGCTTGTTCCGACGAAACCCA 237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 190 CTATGGATTATTGAGTTCCCGATCGTGGTAATCATCTACAGCTTGTTCCGACGAAACCCA 249
Query 238 GAGAAATGCTCGTACTTTAGAGCTGTTGGACGAAGCATAGTAGGACTCATTTCCGGGGCT 297
||||||||||||||||||||||||||||| |||||| |||| ||||| ||| |||| |||
Sbjct 250 GAGAAATGCTCGTACTTTAGAGCTGTTGGCCGAAGCTTAGTCGGACTAATTGCCGGTGCT 309
Query 298 CTTATAAATGCTTTGGGAGCTGTTTCTTTGGGTGCACCTATTGGAATGCAATCTCTACCA 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 310 CTTATAAATGCTTTGGGAGCTGTTTCTTTGGGTGCACCTATTGGAATGCAATCTCTATCA 369
Query 358 AGAACAATTCACTGGTCCTTTCTAATGTCTGTTTTCACGGTTGTACCAGCGACTGCAGTT 417
| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 370 AAAACAATTCACTGGTCCTTTCTAATGTCTGTTTTCACGGTTGTACCAGCAACTGCAGTT 429
Query 418 TTTGGTGCATCATGGACAGATTGGCATCGTGTGTTTGCTTCACTTAAACCAA-CTGGAAA 476
|| ||||||||||||| ||||||||||||| | ||||||||||| ||||||| | ||||
Sbjct 430 TTAGGTGCATCATGGATAGATTGGCATCGTATCTTTGCTTCACTAAAACCAATC-GGAAT 488
Query 477 TGTAGAATATATGATCTT-GATTCCAGCATATGGAGCAATTATTGGAGGTTGGTTTGGAG 535
| ||||| ||||| |||| | |||||||||||||||||||||||||||| ||||||||||
Sbjct 489 TATAGAACATATGCTCTTAG-TTCCAGCATATGGAGCAATTATTGGAGGATGGTTTGGAG 547
Query 536 CTTGGCCTATGCCACTTGACTGGGAAAGGCCATGGCAGGAGTGGCCTATATGTGTGTGTT 595
|||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 548 CTTGGCCTATGCCACTTGACTGGGAAAGACCATGGCAGGAATGGCCTATATGTGTGTGTT 607
Query 596 ATGGAGCTATAGGAGGCTACATTGTTGGACAAATTGTCTCCTTGAGTTTGGTGATTCTTC 655
|||||||||||||||||||||||| ||||||||| || ||||||| ||| |||||
Sbjct 608 ATGGAGCTATAGGAGGCTACATTGGTGGACAAATGGT------GAGTTTGTTGACTCTTC 661
Query 656 TCAG-GAAACACAAGAATATGAAGCTAGCCTAG 687
|||| ||| ||||||||| ||||||||||||||
Sbjct 662 TCAGCGAA-CACAAGAATTTGAAGCTAGCCTAG 693
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33255005314
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5