BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg911453

Length=180
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G60490.1 | Symbols: ATVPS34, VPS34, PI3K | vacuolar protein ...   230    4e-60


> AT1G60490.1 | Symbols: ATVPS34, VPS34, PI3K | vacuolar protein 
sorting 34 | chr1:22285572-22290315 REVERSE LENGTH=2790
Length=2790

 Score =  230 bits (124),  Expect = 4e-60
 Identities = 164/182 (90%), Gaps = 8/182 (4%)
 Strand=Plus/Plus

Query  1    ATGGGTGCGAACGAGTTTCGTTTCTTCCTCTCCTGCGATATCAATTCGCCCGTCACTTTT  60
            |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct  126  ATGGGTGCGAACGAGTTTCGTTTCTTCCTCTCCTGCGATATCAATTCGCCGGTCACTTTT  185

Query  61   CGTGTCGAGAAGCTTGATGGAAACCTCCCAGTCAAGAAATCTTCTGATTCGGTTGTCT-T  119
            ||| ||||||||||||||||||||||||| ||||||||||| ||||||||||  || | |
Sbjct  186  CGTATCGAGAAGCTTGATGGAAACCTCCCCGTCAAGAAATCGTCTGATTCGGGAGT-TGT  244

Query  120  CTTCTTC-CTAGGGGAGAAAAAACCAGAGCTTTACATTGAATGTGCGTGCATTGTATATT  178
            || | || | || |||||||||||||||||||||||||||  |||  ||||||||| |||
Sbjct  245  CTCCATCGC-AGAGGAGAAAAAACCAGAGCTTTACATTGA--GTG--TGCATTGTACATT  299

Query  179  GA  180
            ||
Sbjct  300  GA  301



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 7897312107


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5