BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg911457
Length=495
Score E
Sequences producing significant alignments: (Bits) Value
AT1G16530.1 | Symbols: LBD3, ASL9 | ASYMMETRIC LEAVES 2-like 9 ... 706 0.0
> AT1G16530.1 | Symbols: LBD3, ASL9 | ASYMMETRIC LEAVES 2-like
9 | chr1:5651370-5652883 REVERSE LENGTH=642
Length=642
Score = 706 bits (382), Expect = 0.0
Identities = 461/499 (92%), Gaps = 5/499 (1%)
Strand=Plus/Plus
Query 1 ATGAGACAAAAGGCTCACAGACACGGAAGAACAGTATCGCCTTGTGCCGGCTGTAAGCTT 60
||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 45 ATGAGACAAAAGGGTCACAGACACGGAAGAACAGTATCGCCTTGTGCCGGCTGTAAACTT 104
Query 61 CTCCGGCGAAAATGTGTGAAAGA-T--TGCGTCTTTGCTCCGTATTTTCCGGCCAAAGAG 117
||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||
Sbjct 105 CTCCGGCGAAAATGTGTGAAAGATTCATGCGTCTTTGCTCCGTATTTTCCGGCCAAAGAG 164
Query 118 CCTTACAAGTTTGCCATTGTCCACAAGATTTTTGGTGCTAGTAATGTCAATAAGATGTTG 177
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 165 CCTTACAAGTTTGCCATTGTCCACAAGATTTTTGGTGCTAGTAATGTCAATAAGATGTTG 224
Query 178 CAGGAGCTGTCGGAGAACCACCGGAGCGACGCTGTTAATTCGATGGTGTACGAGGCCAAC 237
|||||||||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 225 CAGGAGCTGTCGGAGAACCACCGGAGCGACGCCGTGGATTCGATGGTGTACGAGGCCAAC 284
Query 238 GCGAGGGTGCAAGATCCTGTATATGGATGTGTAAGGACAATTTCTTCGTTACACAGACAA 297
|||||| | ||||||||||| |||||||||||| |||||||||| |||||||||||||||
Sbjct 285 GCGAGGATACAAGATCCTGTGTATGGATGTGTAGGGACAATTTCGTCGTTACACAGACAA 344
Query 298 CTCGAGACTCTCCAAACTCAGCTTGCTTTCGCTCAGGCCGAGCTGAATCATATCAGGACG 357
|| || ||||||||||||||||| ||||| ||||| |||||| ||| |||||| ||||||
Sbjct 345 CTGGAAACTCTCCAAACTCAGCTCGCTTTTGCTCAAGCCGAGTTGATTCATATAAGGACG 404
Query 358 CTCCACCGTATTGACACTAAACCCCCACCGTACGCGGCGAGTACTGTTACTTTCCCGTCG 417
|||||||||||| | || |||||||| |||||| |||| ||||| ||||||||||| |||
Sbjct 405 CTCCACCGTATTCATACCAAACCCCCGCCGTACACGGCAAGTACCGTTACTTTCCCCTCG 464
Query 418 AACAAAGACTTCTACAGTGACGTCGACATGGCTTTTGTGTATGA-GGATGGTGCCAGAGA 476
||||||||||||||||||||| ||||||||||| ||| |||| | ||||| |||| ||||
Sbjct 465 AACAAAGACTTCTACAGTGACATCGACATGGCTGTTGCGTAT-ACGGATGATGCCGGAGA 523
Query 477 CTCCCTTTGGTCATGCTAG 495
|| ||||||||| ||||||
Sbjct 524 CTTCCTTTGGTCTTGCTAG 542
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 23610049090
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5