BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg911461
Length=1398
Score E
Sequences producing significant alignments: (Bits) Value
AT1G16570.2 | Symbols: | UDP-Glycosyltransferase superfamily p... 2100 0.0
> AT1G16570.2 | Symbols: | UDP-Glycosyltransferase superfamily
protein | chr1:5670577-5673600 REVERSE LENGTH=1729
Length=1729
Score = 2100 bits (1137), Expect = 0.0
Identities = 1209/1244 (97%), Gaps = 4/1244 (0%)
Strand=Plus/Plus
Query 1 ATGGGGAAAAGAGGAAGGGCTTGTGTAGTTGTACTTGGAGATCTTGGTCGAAGTCCTCGG 60
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 53 ATGGGGAAAAGAGGAAGGGCTTGTGTAGTGGTACTTGGAGATCTTGGTCGAAGTCCTCGG 112
Query 61 ATGCAATATCACGCTCTTTCTCTTGCTCGTCAGGCATCATTTCAAGTAGACATTGTTGCA 120
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 113 ATGCAATATCACGCTCTTTCTCTTGCTCGTCAGGCATCATTTCAAGTGGACATTGTTGCA 172
Query 121 TATGGAGGTTCTATACCCCATGAAGCTGTTCTAAATCACCCATCGATCCACATCCATACC 180
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 173 TATGGAGGTTCTATACCCCATGAAGCTGTTCTAAATCACCCATCAATCCACATCCATACC 232
Query 181 ATGGCGCAGCCACGATTCCTTCAGCT-CTTGCCAAAGATACTTTATCCTGTAACTCTCTT 239
||||||||||| |||||| ||||| | ||| |||||||||||||||||||||||||||||
Sbjct 233 ATGGCGCAGCCTCGATTCATTCAG-TACTTTCCAAAGATACTTTATCCTGTAACTCTCTT 291
Query 240 GCTCAAGGCATTTATTCAGTTCACAATGCTTCTCTGGTTTCTTTTCGTAAAAGTACCAGC 299
||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct 292 GCTCAAGGCATTTATTCAGTTTACAATGCTTCTCTGGTTTCTTTTCGTTAAAGTACCAGC 351
Query 300 GCCTGACATTTTCTTGGTCCAGAATCCTCCTTCCGTTCCAACCCTAATTGCTGTTAAGTG 359
|||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 352 GCCTGACATTTTCTTGGTCCAGAATCCTCCTTCCGTCCCAACTCTAATTGCTGTTAAGTG 411
Query 360 GGCGAGTTCATGGAGACGTGCAGCGTTTGTTGTAGATTGGCATAATTTTGGATATACATT 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 412 GGCGAGTTCATGGAGACGTGCAGCGTTTGTTGTAGATTGGCATAATTTTGGATATACGTT 471
Query 420 GTTGGCGTTGTCTTTAGGAAGAAACAATTTGTTTGTATCCTTATACCGCTGGTTTGAGAA 479
|||||| |||||||||||||||||||||||| ||||||||||||||||||||| ||||||
Sbjct 472 GTTGGCATTGTCTTTAGGAAGAAACAATTTGCTTGTATCCTTATACCGCTGGTCTGAGAA 531
Query 480 TCATTATGGAAAGATGGCAACAGGTTCACTGTGTGTCACAAAAGCAATGCAACATGAACT 539
||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 532 TCATTATGGAAAGATGGCAACAGGTTCGCTATGTGTCACAAAAGCAATGCAACATGAACT 591
Query 540 GGATCAGAATTGGGGAGTGAGAGCCCAAGTGTTATATGATCAGCCTCCTGAGTTTTTCCG 599
||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 592 GGATCAGAATTGGGGTGTGAGAGCCAAAGTGTTATATGATCAGCCTCCTGAGTTTTTCCG 651
Query 600 TCCCGCTTTGCTTGAAGAAAGGCATGAGTTGTTTTGCCGAGTGAAAAAGGATCTGTGCCA 659
|||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 652 TCCCGCTTTGCTTGAAGAAAGGCATGAGTTGTTTTGCCGAGTGAGGAAGGATCTTTGCCA 711
Query 660 TCCAATTGGTGTCTATGATATCATTAGTAGAGAGTTGGAAAACCAAGAGCTTAATGAAAC 719
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 712 TCCAATTGGTGTCTATGATTTCATTAGTAGAGAGTTGGAAAACCAAGAGCTTAATGAAAC 771
Query 720 CCTTTTTACTACCAAGA-TTAATACTGACATCTCGCTGAAGCAAAACAGACCAGCTCTTG 778
||||||||||||||| | ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 772 CCTTTTTACTACCAA-ATTTAATGCTGACATCTCGCTGAAGCAAAACAGACCAGCTCTTG 830
Query 779 TTGTGAGCAGTACAAGCTGGACCCCTGATGAAAATTTTGGTATCCTACTGGAAGCTGCAG 838
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 831 TTGTGAGTAGTACAAGCTGGACCCCTGATGAAAATTTTGGTATCCTACTGGAAGCTGCAG 890
Query 839 TGATGTATGATCGGCGTGTGGCTGCAAGATCCAAAGGAAGTGAAACAGCTGAAATTTCAG 898
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 891 TGATGTATGATCGGCGTGTGGCTGCAAGATCAAAAGGAAGTGAAACAGCTGAAATTTCAG 950
Query 899 AAGAGCAACACCTTTATCCCAATTTGTTGTTCATCATTACAGGTAAAGGACCTGAAAAGG 958
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 951 AAGAGCAACACCATTATCCCAATTTGTTGTTCATCATTACAGGTAAAGGACCTGAAAAGG 1010
Query 959 AGATGTACGAGGAGAAAATCAAACGATTAAACCTCAGACATGTGGCATTCCGTACCATGT 1018
|||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct 1011 AGATGTACGAGGAGAAAATCAAACGATTAAACCTTAGACATGTGGCATTCCGTACAATGT 1070
Query 1019 GGCTCGCAGCTGAAGATTACCCATTGCTTTTAGGTTCTGCAGATCTCGGTGTCTGCTTAC 1078
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1071 GGCTCGCAGCTGAAGATTACCCATTGCTTTTAGGTTCTGCAGATCTCGGTGTCTGCTTAC 1130
Query 1079 ACACTTCCTCATCGGGTTTAGACCTTCCCATGAAGGTTGTTGATATGTTTGGATGTGGCC 1138
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1131 ACACTTCCTCGTCGGGTTTAGACCTTCCCATGAAGGTTGTTGATATGTTTGGATGTGGCC 1190
Query 1139 TCCCAGTTTGCTCGGTTTCCTATTCATGCATTCAAGAACTCGTTAAAGATGGGAAGAATG 1198
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 1191 TCCCAGTTTGCTCGGTTTCCTACTCATGCATTCAAGAACTCGTTAAAGATGGGAAGAACG 1250
Query 1199 GACTTTTGTTTTCATCTTCATCAGAATTAGCAGATCAATTATTG 1242
||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1251 GACTTTTGTTTTCATCTTCATCAGAATTAGCAGATCAATTATTG 1294
Score = 263 bits (142), Expect = 4e-69
Identities = 152/157 (97%), Gaps = 0/157 (0%)
Strand=Plus/Plus
Query 1242 GATTCTCTTCAAGGGTTTTCCCGGGAACTGTGATGCCCTAATGTCTCTTAAAGCGGGTGC 1301
||||||||||||||||||||| |||||||||||||| |||||||| ||||||||||||||
Sbjct 1387 GATTCTCTTCAAGGGTTTTCCAGGGAACTGTGATGCACTAATGTCGCTTAAAGCGGGTGC 1446
Query 1302 AATGGAGACTGGTTCTTCGGGTCGATGGGCTACAGAGTGGGAAGATTGTGCAAAACCTTT 1361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1447 AATGGAGACTGGTTCTTCGGGTCGATGGGCTACAGAGTGGGAAGATTGTGCAAAACCTTT 1506
Query 1362 GATCACTCAGGTCGTGTCTCAAATAGCAGATTCATGA 1398
||||||||||||||||||||||| ||||||||||||
Sbjct 1507 AATCACTCAGGTCGTGTCTCAAATTGCAGATTCATGA 1543
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68875147740
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5