BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg911467
Length=627
Score E
Sequences producing significant alignments: (Bits) Value
AT5G07950.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 403 9e-112
> AT5G07950.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: chloroplast; EXPRESSED IN: 20 plant structures;
EXPRESSED DURING: 9 growth stages; Has 30201 Blast hits
to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396;
Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses -
0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:2540284-2542136
REVERSE LENGTH=1247
Length=1247
Score = 403 bits (218), Expect = 9e-112
Identities = 269/294 (91%), Gaps = 2/294 (1%)
Strand=Plus/Plus
Query 93 GTATATGCCAATGATGGAGCTTGGTGTGTCGAGTAACATGTTTGATATCAAGAAGAACGC 152
||||||||||||||||||||||||||||| |||| |||||||||||||| | ||||| ||
Sbjct 335 GTATATGCCAATGATGGAGCTTGGTGTGTTGAGTGACATGTTTGATATCGACAAGAAAGC 394
Query 153 TTTGAAGAAGCTGTCTAAGCAACAGAGTGCTTATCGAATCAAGCTTTTATCGTCGTACAA 212
|||||||||||||| || |||||||||| | |||||||||||||||||||| ||||||||
Sbjct 395 TTTGAAGAAGCTGTTTACGCAACAGAGTTCCTATCGAATCAAGCTTTTATCTTCGTACAA 454
Query 213 GGAAATGGTAGCCGTTGTTGTTGAGATGGTAAATGCAAGCAGATCTCTGAGATGTTATAC 272
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 455 GGAAATGGTAGCTGTTGTTGTTGAGATGGTAAATGCAAGCAGATCTCTGAGATGTTACAC 514
Query 273 CAAGCT-AGGTACCGAGTCACTTGTACAGTTCTCTTGCTCTAAGGAAGATTCAAGTGATG 331
||||| || ||||| ||||||| ||||||||||| || ||||||||||||||| |||||
Sbjct 515 GAAGCTGAG-TACCGGGTCACTTATACAGTTCTCTGGCACTAAGGAAGATTCAAATGATG 573
Query 332 CTGGAGATTGTGGTGGCATCCCTGTATTTAATTTCTGGAATGTCTCTACATTTG 385
|||||||||| |||||||| ||||| |||||||| |||||||||||| ||||||
Sbjct 574 CTGGAGATTGCGGTGGCATTCCTGTGTTTAATTTTTGGAATGTCTCTGCATTTG 627
Score = 292 bits (158), Expect = 2e-78
Identities = 180/190 (95%), Gaps = 3/190 (2%)
Strand=Plus/Plus
Query 437 AGAAGATGGCTGAGGAGTTTGTGGAGATGTTCATACGCGAAGTAATGATAAAGGGATTGC 496
||||||||||||||||| ||||||||||||||| ||||||||||||| ||||| ||||||
Sbjct 628 AGAAGATGGCTGAGGAGCTTGTGGAGATGTTCAAACGCGAAGTAATGCTAAAGAGATTGC 687
Query 497 TCATAATGGAACTGATCTCTTTAAGCACTGAAGTTCCTCAACCCATCAACAACAGTTGGT 556
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 688 TCATAATGGAACTGATCTCTTTAAGCACTGAAGTTCCTCAACCCATCAACAACAGTTGGT 747
Query 557 CAGATGAGCTTTACCATGGGGAATTT-ATCACATCTCACCAAATGTTCTTTCTATTCCAT 615
||||||||||||||||||| |||||| |||| |||||||||||||||||| ||||| ||
Sbjct 748 CAGATGAGCTTTACCATGGAGAATTTGATCA--TCTCACCAAATGTTCTTTATATTCTAT 805
Query 616 GGAAGTAGCT 625
||||||||||
Sbjct 806 GGAAGTAGCT 815
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30240956494
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5