BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg911486
Length=2226
Score E
Sequences producing significant alignments: (Bits) Value
AT1G16830.1 | Symbols: | Pentatricopeptide repeat (PPR) superf... 2700 0.0
AT1G16825.1 | Symbols: | Reticulon family protein | chr1:57588... 523 2e-147
> AT1G16830.1 | Symbols: | Pentatricopeptide repeat (PPR) superfamily
protein | chr1:5760772-5762619 FORWARD LENGTH=1848
Length=1848
Score = 2700 bits (1462), Expect = 0.0
Identities = 1739/1869 (93%), Gaps = 33/1869 (2%)
Strand=Plus/Plus
Query 370 GATCTTAGCGTCACGAGTAAGATGCTATGGAGATGCAATTGGGTGAAGCAGAGGAAGAAA 429
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1 GATCTTAGCGTCACGAGTAAGATGCTATGGAGATGCAATTGGGTGAAGCAGAGGAAGAGA 60
Query 430 ATCCTTAACACACTCAGTTTCTCTTCAG-TTCACGGTCAATATTCTCTGGAAAATACTGC 488
|||||||||||||||||||||||||| | ||||||||||||| || || |
Sbjct 61 ATCCTTAACACACTCAGTTTCTCTTC-GATTCACGGTCAATA---TC---------CT-C 106
Query 489 TGGGCCTCGTAGTATTGCTTCGAAGCCACTCACGCACGATAATGTGTATTCGTGTTTACG 548
||| ||| || ||| ||||||||||||||||||||||||||||||| ||||||||
Sbjct 107 -GGG---AGTA-TACTGCCGCGAAGCCACTCACGCACGATAATGTGTATTCTTGTTTACG 161
Query 549 AGAATCTCCATCTGATCTCAAAACTTTGAATTTCTTCTTCTGGTGCGCGAGGCAGAACAA 608
|||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 162 AGAATCTCCAGCTGATCTCAAAACTTTGAATTTCTTCTTCTGGTGCGCGAAGCAGAACAA 221
Query 609 TTACTTCCACGATGATCGAGCATTTGATCACATGGTTGGTGTTGTTGAGAAGCTAACTCG 668
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 222 TTACTTCCACGATGATCGAGCATTTGATCACATGGTTGGTGTTGTTGAGAAACTAACTCG 281
Query 669 TGAATACTATAGCATTGATCGAATCATAGAGGAG-TTGAAAGTATATGGTTGTGAGATTA 727
|||||||||||||||||||||||||||||| ||| |||||| | | ||||||||||||||
Sbjct 282 TGAATACTATAGCATTGATCGAATCATAGA-GAGATTGAAAATCTCTGGTTGTGAGATTA 340
Query 728 AGCCTCGGGtttttttGTTATTGCTGGAAATCTTTTGGCGTGGCCATATCTATGATAAGG 787
||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct 341 AGCCTCGGGTTTTTTTGTTGTTGCTGGAAATATTTTGGCGTGGCCATATCTATGATAAGG 400
Query 788 CTATTCAGGTTTACACTGGCATGAGTAGTTTTGGATATGTGCCCAACACTCGTGCCATGA 847
||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 401 CTATTGAGGTTTACACTGGCATGAGTAGTTTTGGATTTGTGCCCAACACTCGTGCCATGA 460
Query 848 ATATGATGATGGATGTCAATTTCAAAGTCAATCTTGTTAATGGAGCTCTGGAAATTTTTG 907
|||||||||||||||| ||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 461 ATATGATGATGGATGTTAATTTCAAACTCAATGTTGTTAATGGAGCTCTGGAAATTTTTG 520
Query 908 AAGGAATCCGTTTTCGAAATTTCTTTAGTTTTGATATTGCATTGAGTCATTTTTGC---- 963
||||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 521 AAGGAATCCGTTTTCGAAATTTCTTTAGTTTCGACATTGCATTGAGTCATTTTTGCAGTA 580
Query 964 -A----GTAGAGGGGATTTGGTTGGTGTGAAGATAGTTTTGAAGAGAATGATTGGAGAAG 1018
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 581 GAGGGGGTAGAGGGGATTTGGTTGGTGTGAAGATAGTTTTGAAGAGAATGATTGGAGAAG 640
Query 1019 GTTTTTATCCTAACACTGAGAGATTTGGGCAGATTCTTAGGCTGTGCTGTAGAACAGGCT 1078
||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 641 GTTTTTATCCTAACAGAGAGAGGTTTGGGCAGATTCTTAGGCTGTGCTGTAGAACAGGCT 700
Query 1079 GCGTCGCTGAAGCGTTTCAAGTAGTTGGATTGATGATATGTAGTGGAATCTCTGTGTCTG 1138
||||| ||||||| ||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 701 GCGTCTCTGAAGCATTTCAAGTAGTTGGATTGATGATTTGTAGTGGAATCTCTGTATCTG 760
Query 1139 TTAATGTCTGGAGTATGTTGGTTAGTGGtttttttCGTTCAGGAGAACCGCAAAAGGCGG 1198
||||||| ||||| ||||||||||| || ||||||||||||||||| |||||||||||||
Sbjct 761 TTAATGTATGGAGCATGTTGGTTAGCGGGTTTTTTCGTTCAGGAGAGCCGCAAAAGGCGG 820
Query 1199 TTGATCTGTTCAATAAGATGATTCAGATCGGTTGCTTTCCTAATCTTGTGACGTATACTA 1258
|||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||
Sbjct 821 TTGATCTGTTCAATAAGATGATTCAGATTGGTTGCTCACCTAATCTTGTGACGTATACTA 880
Query 1259 GTTTGATCAAAGGGTTTGTGGATTTAGGAATGGTTGAAGAAGCGTTTACCGTGCTAAGTA 1318
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 881 GTTTGATCAAAGGGTTTGTGGATTTAGGAATGGTTGATGAAGCGTTTACCGTGCTAAGTA 940
Query 1319 AAGTGCAATCTGAAGGTTTAGCTCCAGATATTGTTCTTTGCAATTTGATGATACACACAT 1378
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 941 AAGTGCAATCTGAAGGTTTAGCTCCAGATATTGTTCTTTGCAATTTGATGATACACACGT 1000
Query 1379 TCACAAGACTCGGAAGATTCGAAGAAGCTCGCAACGTTTTCGCCAGTTTGaaaaaaaGGA 1438
|||||||||||||||||||||||||||||| || |||||| | |||||| |||||||||
Sbjct 1001 ACACAAGACTCGGAAGATTCGAAGAAGCTCGTAAGGTTTTCACTAGTTTGGAAAAAAGGA 1060
Query 1439 AACTTGTGCCGGATCAGTATACTTTTGTTTCAATACTGTCTAGTCTATGTTTGTCAGGGG 1498
||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 1061 AACTTGTGCCGGATCAGTATACTTTTGCATCAATACTGTCTAGTCTATGTTTGTCTGGGA 1120
Query 1499 AGTTCGATCTCGTTCCTAGGATCACCCATGGTATAGGAACAGATTTTGATCTGGTTACTG 1558
|||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1121 AGTTTGATCTCGTTCCTAGGATCACCCACGGTATAGGAACAGATTTTGATCTGGTTACTG 1180
Query 1559 GAAACTTGCTCTCAAACTGTTTCAGCAAGATTGGTTACTATTCGTACGCGTTGAAAGTAC 1618
|||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||
Sbjct 1181 GAAACTTGCTCTCAAACTGTTTCAGCAAGATTGGTTACAATTCGTACGCTTTGAAAGTAC 1240
Query 1619 TCGGCATCATGTCTAACAAAGATTTAGCTTTGGATTGTTATACATATACTGTGTATCTTA 1678
|| ||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1241 TCAGCATCATGTCTTACAAAGATTTTGCTTTGGATTGTTATACATATACTGTGTATCTTA 1300
Query 1679 CTGCGCTTTGTCGAGGAGGAGCACCTCGCGCTGCCATTAAGATGTATGAAATAATAACCA 1738
||| |||||||||||||||||||||||||||||||||||||||||| ||||||||| ||
Sbjct 1301 GTGCACTTTGTCGAGGAGGAGCACCTCGCGCTGCCATTAAGATGTATAAAATAATAATCA 1360
Query 1739 GGGAGAACAGACATCTTGGTGCTCATTTTCATTCTGCAATAATCGACAGTCTTATAGAGC 1798
|||||| | |||||| | |||||||||||||||||| ||||||||||||||||||||||
Sbjct 1361 AGGAGAAAAAACATCTCGATGCTCATTTTCATTCTGCGATAATCGACAGTCTTATAGAGC 1420
Query 1799 TTGGTAGATACAATACCGCGATTCATTTGTTTAAACGATGCATCTTGGAGAAGTATCCTT 1858
|||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1421 TTGGTAAATACAATACCGCGGTTCATTTGTTTAAACGATGCATCTTGGAGAAGTATCCTT 1480
Query 1859 TAGATGTAGTGTCATTTACAGTAGCTATTAAGGGACTTATGCGCGCGAAAAGGATCGATG 1918
||||||| ||||| | |||||||||||||||||| ||| |||| |||||||||||||| |
Sbjct 1481 TAGATGTTGTGTCGTATACAGTAGCTATTAAGGGGCTTGTGCGTGCGAAAAGGATCGAGG 1540
Query 1919 AAGCTTGTTCTCTGTGTTCCGACATGAAAGAAAATGGGATTTTTCCGAATCGAAGAACTT 1978
|||| | |||| |||||| ||||||||||||| |||||||| |||||||||| | ||||
Sbjct 1541 AAGCCTATTCTTTGTGTTGCGACATGAAAGAAGGTGGGATTTATCCGAATCGACGGACTT 1600
Query 1979 ATCGGACTATTATATCTGGAT-TGTGCAAGGAGAAGGAGACTGAGAAAGTGAAAAAGATT 2037
||||||||||||| ||||| | |||||||||||||||||||||||||||||| |||||||
Sbjct 1601 ATCGGACTATTATTTCTGG-TCTGTGCAAGGAGAAGGAGACTGAGAAAGTGAGAAAGATT 1659
Query 2038 TTGAGGGAATGCATCGAGGAAGGAGTTGAGTTGGATCCTAATACTAAGTTTAAAGTGTTT 2097
||||||||||||||| |||| |||||||||||||||||||||||||||||| |||||| |
Sbjct 1660 TTGAGGGAATGCATCCAGGAGGGAGTTGAGTTGGATCCTAATACTAAGTTTCAAGTGTAT 1719
Query 2098 AGTCTCTTGTCTCGATACCGGGGAGACTTTTCTGAATTTAGATCTGTTTTTGAGAAATGG 2157
||||||||||||||||| || ||||||||||||||||||||||| ||||| |||||||||
Sbjct 1720 AGTCTCTTGTCTCGATATCGCGGAGACTTTTCTGAATTTAGATCGGTTTTCGAGAAATGG 1779
Query 2158 AAATCGGAATTTACAGAGAACATGGATGTTTCTGATTCCGACGATGAATTATTTGTTTCT 2217
||||||||||||||||| || |||||||||| |||||||||||||||||||||||||||
Sbjct 1780 AAATCGGAATTTACAGAAAATGTGGATGTTTCCGATTCCGACGATGAATTATTTGTTTCT 1839
Query 2218 GTTGGTTGA 2226
|||||||||
Sbjct 1840 GTTGGTTGA 1848
> AT1G16825.1 | Symbols: | Reticulon family protein | chr1:5758855-5760501
FORWARD LENGTH=651
Length=651
Score = 523 bits (283), Expect = 2e-147
Identities = 302/311 (97%), Gaps = 2/311 (1%)
Strand=Plus/Plus
Query 1 ATGGGGGAAATGGGGAAGGCGATAGGATTGCTGATAAGCGGGACGCTTGTGTATCACCAT 60
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 23 ATGGGGGAAATGGGAAAGGCGATAGGATTGCTGATAAGCGGGACGCTTGTGTATCACCAT 82
Query 61 TGCGCTAATCGCAACGCGACTCTTCTCTCCCTTC-TCTCCGACGTTCTCATCGTTCTCTT 119
||||||||||||||||||||||||||||| | || |||||||||||||||||||||||||
Sbjct 83 TGCGCTAATCGCAACGCGACTCTTCTCTCGC-TCATCTCCGACGTTCTCATCGTTCTCTT 141
Query 120 ATTTTCACTCGCCATTCTCGGCCTTCTTTTTCGTCAACTCAATGTCTCGGTACCTGTGGA 179
|| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 142 ATCTTCACTCGCCATTCTCGGCCTTCTTTTTCGTCACCTCAATGTCTCGGTACCTGTGGA 201
Query 180 TCCATTAGAGTGGCAAATATCACAGGCCACAGCCTGTAACATTGTTGCGCGCTTAGCTAA 239
|||||||||||||||||||||||| | |||||||||||||||||| ||||||||||||||
Sbjct 202 TCCATTAGAGTGGCAAATATCACAAGACACAGCCTGTAACATTGTGGCGCGCTTAGCTAA 261
Query 240 TACTGTTGGAGCAGCTGAATCCGTTCTGCGGGTTGCAGCAACAGGACATGACAAGAGGCT 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 262 TACTGTTGGAGCAGCTGAATCCGTTCTGCGGGTTGCAGCAACAGGACATGACAAGAGGCT 321
Query 300 CTTTGTTAAGG 310
|||||||||||
Sbjct 322 CTTTGTTAAGG 332
Score = 89.8 bits (48), Expect = 1e-16
Identities = 48/48 (100%), Gaps = 0/48 (0%)
Strand=Plus/Plus
Query 309 GGCAGCTCTAGGACGAATCATATCGGGTGTGACCATTGCCTATGCAGG 356
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 355 GGCAGCTCTAGGACGAATCATATCGGGTGTGACCATTGCCTATGCAGG 402
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 110441199000
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5