BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg911499

Length=345
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G16960.1 | Symbols:  | Ubiquitin domain-containing protein |...   588    1e-167


> AT1G16960.1 | Symbols:  | Ubiquitin domain-containing protein 
| chr1:5799888-5800845 FORWARD LENGTH=676
Length=676

 Score =  588 bits (318),  Expect = 1e-167
 Identities = 336/345 (97%), Gaps = 0/345 (0%)
 Strand=Plus/Plus

Query  1    ATGGGTTGTTCTAGCTCGAGAACCATAGCAGAAGGGAAAAAAGAAAAGATTCGAAGACCA  60
            |||||||||||||||||||||||||||||||| |||||||| || |||||||||||||||
Sbjct  111  ATGGGTTGTTCTAGCTCGAGAACCATAGCAGAGGGGAAAAAGGAGAAGATTCGAAGACCA  170

Query  61   AAAACATGGAAACATCCTCAACCGATATCAAGAGCTGAGCTCACACAGATGCGAGAGGAG  120
            |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct  171  AAAACATGGAAACATCCTCAACCGATATCAAGAGATGAGCTCACACAGATGCGAGAGGAG  230

Query  121  TTCTGGGACACAGCTCCTCACTATGGAGGCAAGAAAGAGATATGGGATGCGTTACGAGCA  180
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct  231  TTCTGGGACACAGCTCCTCACTATGGAGGCAAGAAAGAGATATGGGATGCGTTACGAGCT  290

Query  181  GCAGCAGAAGAGGAGGATTTATCGCTGGCGCAAACGATACTTGAGAGTGCTGGTGTGATT  240
            |||||||||||||| ||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct  291  GCAGCAGAAGAGGATGATTTATCGCTTGCGCAAACGATACTTGAGAGTGCCGGTGTGATT  350

Query  241  GTTCAGAACACTGACCTCACCATTTGTTACGACGAGAAAGGTTCCAAGTATGAATTGCCT  300
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  351  GTTCAGAACACTGACCTCACCATTTGTTACGACGAGAAAGGTTCCAAGTATGAATTGCCT  410

Query  301  AAATACGTTCTCAGGGATCCTTCAAATTTGATCCGAACCAAATAG  345
            |||||||||||||||||||||||||||||||||| ||||||||||
Sbjct  411  AAATACGTTCTCAGGGATCCTTCAAATTTGATCCCAACCAAATAG  455



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 16135947429


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5