BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg911502
Length=801
Score E
Sequences producing significant alignments: (Bits) Value
AT1G17010.1 | Symbols: | 2-oxoglutarate (2OG) and Fe(II)-depen... 571 3e-162
AT1G17020.1 | Symbols: SRG1, ATSRG1 | senescence-related gene 1... 383 2e-105
AT4G25310.1 | Symbols: | 2-oxoglutarate (2OG) and Fe(II)-depen... 237 1e-61
> AT1G17010.1 | Symbols: | 2-oxoglutarate (2OG) and Fe(II)-dependent
oxygenase superfamily protein | chr1:5817567-5819352
FORWARD LENGTH=1355
Length=1355
Score = 571 bits (309), Expect = 3e-162
Identities = 362/386 (94%), Gaps = 10/386 (3%)
Strand=Plus/Plus
Query 1 ATGGAAGCCAAAGGAGAAACCCCGTGGAGCTCTATTTTAGTTCCTTCTGTTAAGGAGATG 60
||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 101 ATGGAAGCCAAAGAAGAAACCCCGTGGAGCTCTATTTTAGTTCCTTCTGTTCAGGAGATG 160
Query 61 GTGAAGGATAAGATGATCACGACCGTTCCTCCCAGGTATGTTCGGTATGATCAAGACAAA 120
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 161 GTGAAGGATAAGATGATCACGACCGTTCCTCCCAGATATGTTCGGTATGATCAAGACAAA 220
Query 121 GCTGAAGTCGTCG---ATGATTCTGGTCTCATATCCGAGATCTCAATCATCGACATGAAG 177
|||||||||||| |||||||||| ||||||||||||||| | ||||||||||||||
Sbjct 221 ACTGAAGTCGTCGTCCATGATTCTGGCCTCATATCCGAGATCCCCATCATCGACATGAAT 280
Query 178 CGGTTGTGTT-TGTCTACCGCCGTGGACTCTGAGGTTGGGAACAAACTCGACTTCGCTTG 236
|||||||||| | |||||||||||||||||||||||| | | ||||||||||| |||||
Sbjct 281 CGGTTGTGTTCT-TCTACCGCCGTGGACTCTGAGGTT--G-AGAAACTCGACTTTGCTTG 336
Query 237 CAAAGAATGTGGATTTTTCCAGCTTGTAAACCATGGAATAGACCCAAGTTTCTTGGACAA 296
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 337 CAAAGAATATGGATTTTTCCAGCTTGTAAACCATGGAATAGACCCAAGTTTCTTGGACAA 396
Query 297 AATAAAGTCAGAGATTCAAGATTTCTTCAACCTTCCCATGGAAGAGAGAAAGAAGTTGTG 356
||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||
Sbjct 397 AATAAAGTCAGAGATTCAAGATTTCTTCAACCTTCCCATGGAAGAAAAAAAGAAGTTGTG 456
Query 357 GCAG-CAATCAGCGGTGATGGAAGGG 381
|||| || |||||||||||||||||
Sbjct 457 GCAGACAC-CAGCGGTGATGGAAGGG 481
Score = 383 bits (207), Expect = 2e-105
Identities = 230/241 (95%), Gaps = 2/241 (1%)
Strand=Plus/Plus
Query 558 GATCATAACGAACGGGACATACCGAAGCATCGAGCATCGGGCAGTGGTGAACTTGGAGAA 617
|||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||
Sbjct 934 GATCATAACGAACGGGACATACCGAAGCATCGAGCACCGGGCAATGGTGAACTTGGAGAA 993
Query 618 AGAGAGGCTCTCCATTGCGACATTTCATAACACGGGACTGGATAAAGAAATTGGTCCGGC 677
||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||
Sbjct 994 AGAGAGGCTCTCCATTGCGACATTTCACAACACGGGAATGGATAAAGAAATTGGTCCGGC 1053
Query 678 GAGAACCCTTGTTCAAGGGCAAGAGGCTGCAAAGTTTAGAAGCCTGAAAACTAAAGACTA 737
||||| |||||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct 1054 GAGAAGCCTTGTTCAAAGACAAGAGGCTGCAAAGTTTAGAAGCCTGAAAACTAAAGACTA 1113
Query 738 CTTGAATGGCTTGTTCTTCC-GTGAACTCAAAGGAAAATCTTATCTTGATGCTATGAGAA 796
||||||||||||||| |||| |||||||||||||||| |||||||||||||||||||||
Sbjct 1114 CTTGAATGGCTTGTT-TTCCCGTGAACTCAAAGGAAAGGCTTATCTTGATGCTATGAGAA 1172
Query 797 T 797
|
Sbjct 1173 T 1173
Score = 261 bits (141), Expect = 7e-69
Identities = 166/178 (93%), Gaps = 1/178 (1%)
Strand=Plus/Plus
Query 380 GGGATACATTAGATATGTATTACACTCAAGTAAAGAGTATAGCTAAGATCTTACTAGCGA 439
||||||| ||||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 606 GGGATACGTTAGATATGTATTCCACTCGAGTAAAGAGTATAGCTAAGATCTTACTAGCGA 665
Query 440 AAATGGCGAGAGCCCTACAGATCAAACCAGAGGAGATAGAAGAAATATTTGGTGATGATA 499
||||||||| |||| | |||||||| ||||||||| ||||||||||||||||||||||||
Sbjct 666 AAATGGCGAAAGCCTTGCAGATCAAGCCAGAGGAGGTAGAAGAAATATTTGGTGATGATA 725
Query 500 TGATGCAGAGTATGAGAATGAACTACT-TCCCCCGTGTCCACAACCCAATCAGGTTAC 556
|||||||||||||||| |||||||||| |||||||||||||||||| |||| ||||||
Sbjct 726 TGATGCAGAGTATGAGGATGAACTACTATCCCCCGTGTCCACAACCTAATCTGGTTAC 783
> AT1G17020.1 | Symbols: SRG1, ATSRG1 | senescence-related gene
1 | chr1:5820206-5822013 FORWARD LENGTH=1401
Length=1401
Score = 383 bits (207), Expect = 2e-105
Identities = 328/385 (85%), Gaps = 13/385 (3%)
Strand=Plus/Plus
Query 1 ATGGAAGCCAAAGGAGAAACCCCGTGGAGCTCTATTTTAGTTCCTTCTGTT-AAGGAGAT 59
|||||||| ||||| | | | | |||||||||||| ||||||| || ||| || |||||
Sbjct 53 ATGGAAGCAAAAGGGGCAGCACAGTGGAGCTCTATCCTAGTTCCATCCGTTCAA-GAGAT 111
Query 60 GGTGAAGGATAAGATGATCACGACCGTTCCTCCCAGGTATGTTCGGTATGATCAAGACAA 119
||| ||||| |||| |||||||||||||||||| ||||| || |||| ||||||||||||
Sbjct 112 GGTTAAGGAGAAGACGATCACGACCGTTCCTCCTAGGTACGTCCGGTCTGATCAAGACAA 171
Query 120 AGCTGAAGTCG-TCGATGATTCTGGTCT-CATATCCGAGATCTCAATCATCGACATGAAG 177
| ||||||||| | ||||||| || | | | || |||||| |||||||||| ||||||
Sbjct 172 AACTGAAGTCGAT-GATGATTTTGATGTGAAAAT-TGAGATCCCAATCATCGATATGAAG 229
Query 178 CGGTTGTGTT-TGTCTACCGCCGTGGACTCTGAGGTTGGGAACAAACTCGACTTCGCTTG 236
|| ||||||| | || ||| || |||| ||||||||| | | |||||||||||||||||
Sbjct 230 CGTTTGTGTTCT-TCAACCACCATGGATTCTGAGGTT--G-AGAAACTCGACTTCGCTTG 285
Query 237 CAAAGAATGTGGATTTTTCCAGCTTGTAAACCATGGAATAGACCCAAGTTTCTTGGACAA 296
|||||| || ||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 286 CAAAGAGTGGGGATTTTTCCAGCTTGTAAACCATGGAATAGACTCAAGTTTCTTGGACAA 345
Query 297 AATAAAGTCAGAGATTCAAGATTTCTTCAACCTTCCCATGGAAGAGA-GAAAGAAGTTGT 355
| ||||||||||||||||||||||||||||||||||||||||||| | ||| |||||| |
Sbjct 346 AGTAAAGTCAGAGATTCAAGATTTCTTCAACCTTCCCATGGAAGAAAAGAA-GAAGTTCT 404
Query 356 GGCAGCAATCAGCGGTGATGGAAGG 380
|||||| | ||| | ||| |||||
Sbjct 405 GGCAGCGACCAGATGAGATAGAAGG 429
> AT4G25310.1 | Symbols: | 2-oxoglutarate (2OG) and Fe(II)-dependent
oxygenase superfamily protein | chr4:12949664-12951234
FORWARD LENGTH=1247
Length=1247
Score = 237 bits (128), Expect = 1e-61
Identities = 305/384 (79%), Gaps = 37/384 (10%)
Strand=Plus/Plus
Query 1 ATGGAAGCCAAAGGAGAAACCCCGTGGAGCTCTATTTTAGTTCCTTCTGTT-AAGGAGAT 59
||||||| ||||||| || || | || ||| || |||||||||||||| || |||||
Sbjct 90 ATGGAAGGTAAAGGAGTAA--CC-TTTAGTTCTGTTATAGTTCCTTCTGTTCAA-GAGAT 145
Query 60 GGTGAAGGATAAGATGATCACGACCG---TTCCTCCCAGGTATGTTCGGTATGATCAAGA 116
||||||||| ||| ||||||| || | ||||||| |||||||| |||| |||||||||
Sbjct 146 GGTGAAGGAGAAGGTGATCACAACGGTACTTCCTCCGAGGTATGTGCGGTCTGATCAAGA 205
Query 117 CAAA-GCTGAAGTC-GTCGA-TGATTCTGGTCTCATATCCGAGATCTCAATCATCGACAT 173
||| || | || | | | | ||||||||| | | | || | ||| ||||||| |||||
Sbjct 206 AAAAGGC-G-AGGCAG-CCATTGATTCTGG--TGAAAACC-AAATCCCAATCATAGACAT 259
Query 174 GAAG-CGGTTGTGTT-TGTCTACCGCCGTGGACTCTGAGGTTGGGAACAAACTCGACTTC 231
| || | |||| || | || ||| || |||| |||||| || | |||||||||||||
Sbjct 260 G-AGTCTTTTGTCTTCT-TCAACCTCCATGGATTCTGAGATT--G-ACAAACTCGACTTT 314
Query 232 GCTTGCAAAGAATGTGGATTTTTCCAGCTTGTAAACCATGGAATAGACCCAAGTTTCTTG 291
|||||||||||||| ||||||||||||||||||||||||||||| ||| || |
Sbjct 315 GCTTGCAAAGAATGGGGATTTTTCCAGCTTGTAAACCATGGAATGGAC-----TT----G 365
Query 292 GACAAAATAAAGTCAGAGATTCAAGATTTCTTCAACCTTCCCATGGAAGAGA-GAAAGAA 350
|||||| | ||||| || |||||||||||||||||||||||||||||||||| ||| |||
Sbjct 366 GACAAATTCAAGTCCGATATTCAAGATTTCTTCAACCTTCCCATGGAAGAGAAGAA-GAA 424
Query 351 GTTGTGGCAGCAATCAGCGGTGAT 374
| ||||||| ||| | |||||||
Sbjct 425 GCTGTGGCAACAACC--CGGTGAT 446
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38981698072
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5