BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg911565
Length=1119
Score E
Sequences producing significant alignments: (Bits) Value
AT1G17550.1 | Symbols: HAB2 | homology to ABI2 | chr1:6034362-6... 1290 0.0
AT1G17545.1 | Symbols: | Protein phosphatase 2C family protein... 296 3e-79
> AT1G17550.1 | Symbols: HAB2 | homology to ABI2 | chr1:6034362-6037289
FORWARD LENGTH=2441
Length=2441
Score = 1290 bits (698), Expect = 0.0
Identities = 931/1040 (90%), Gaps = 29/1040 (3%)
Strand=Plus/Plus
Query 93 TAATGTAGCAAGAGGAAGGAGGAGGAGTGTCTATGAGCTAGAGTGTATACCTCTTTGGGG 152
||||||||||||||| | || |||||||| ||||| |||||||||||||||||||||||
Sbjct 1068 TAATGTAGCAAGAGG-A--AGCAGGAGTGTTTATGAACTAGAGTGTATACCTCTTTGGGG 1124
Query 153 CACAG-TGTCAATCTGCGGTGAAAGGTCTGAAATGGAGGATGCTGTTAGAGCATTACCTC 211
||| | | ||||| ||||||| ||| |||||||||||||||||||||||||| |||||||
Sbjct 1125 CAC-GATTTCAATTTGCGGTGGAAGATCTGAAATGGAGGATGCTGTTAGAGCTTTACCTC 1183
Query 212 ATTTTCTCAAAATACCTATCAGAATGCTTATGGGGGATCATGAAGGGATTACTCCAA-CC 270
|||||||||||||||| |||| ||||||||||||||||||||||||||| | ||||| |
Sbjct 1184 ATTTTCTCAAAATACCCATCAAAATGCTTATGGGGGATCATGAAGGGATGAGTCCAAGTC 1243
Query 271 GTCACATGTCTTACTAGTCACTTCTTCGGTGTATATGATGGCCACAGAGGCACTCAGGTT 330
|| ||| ||| |||||||||||||| |||||||||||||||||| ||||| ||||||||
Sbjct 1244 -TCCCATATCTCACTAGTCACTTCTTTGGTGTATATGATGGCCACGGAGGCGCTCAGGTT 1302
Query 331 GCTGACTATTGCCATGCTAGAATCCATTTTGCTTTGG-T-------T-GAACGGATAAAA 381
|||||||||||||||| ||||||||| | |||||||| | | |||||||| |||
Sbjct 1303 GCTGACTATTGCCATGATAGAATCCACTCTGCTTTGGCTGAAGAAATCGAACGGATTAAA 1362
Query 382 GAGGAATTGTGCAAGAGGAACACTGGTGAGTATAGTAGGCAGGTCCAGTGGGAGAAAGTC 441
||||||||||| | |||||||||||| ||| ||||||||||||||||||||||||||
Sbjct 1363 GAGGAATTGTGTAGGAGGAACACTGGCGAG---GGTAGGCAGGTCCAGTGGGAGAAAGTC 1419
Query 442 TTTGTAGATTGTTACCTAAAGGTCGATGATGAGGTCAAAGGGAGAATCAGGAGACCTGTT 501
|||||||||||||||||||| |||||||||||||| ||||||| ||||| |||||||
Sbjct 1420 TTTGTAGATTGTTACCTAAAAGTCGATGATGAGGTTAAAGGGAAAATCAACAGACCTG-- 1477
Query 502 TCTGGTTCTGGTTCTTCTGATAGGATGGTTCTTCAGGCTGTTTCCCCTGAGACCGTAGGA 561
| | | | ||||||||||||||||||||||||| | |||||||||||||| ||||| |||
Sbjct 1478 T-T-G-T-TGGTTCTTCTGATAGGATGGTTCTTGAAGCTGTTTCCCCTGAAACCGTTGGA 1533
Query 562 TCAACTGCTGTGGTTGCTTTGGTTTGCTCATCACATATCATAGTTTCCAACTGTGGTGAT 621
|| ||||||||||||||||||||||| ||||| ||||| ||||| || |||||||||||
Sbjct 1534 TCGACTGCTGTGGTTGCTTTGGTTTGTTCATCGCATATAATAGTCTCAAACTGTGGTGAC 1593
Query 622 TCAAGAGTGGTTTTACTCCGCGGCAAAGAATCCATGCCTTTATCCGTTGATCACAAACCT 681
||||||| ||||||||||| |||||||| |||||||||||||| ||||||||||||||
Sbjct 1594 TCAAGAGCAGTTTTACTCCGAGGCAAAGACTCCATGCCTTTATCAGTTGATCACAAACCA 1653
Query 682 GATAGAGAGGATGAGTATGCAAGAATAGAGAAAGCTGGAGGAAAAGTTATACAATGGCAA 741
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1654 GATAGAGAGGATGAGTATGCACGAATAGAGAAAGCTGGAGGAAAAGTTATACAATGGCAA 1713
Query 742 GGCGCTCGTGTTTCTGGCGTTCTCGCAATGTCTAGGTCCATCGGTGATGAATACCTGGAG 801
||||||||||||||||||||||| || ||||| ||||||||||||||| |||| ||||||
Sbjct 1714 GGCGCTCGTGTTTCTGGCGTTCTTGCCATGTCCAGGTCCATCGGTGATCAATATCTGGAG 1773
Query 802 CCATATGTAATACCAGTTCCTGAAGTGACGTTTATGCCACGAGCTAGAGAAGACGAGTGT 861
|||| ||||||||||| ||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1774 CCATTTGTAATACCAGATCCCGAAGTGACGTTTATGCCACGAGCTAGAGAAGACGAGTGT 1833
Query 862 CTTATATTGGCCAGTGATGGACTTTGGGACGTAATGAGTAACCAAGAAGCTTGCGAGTTA 921
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1834 CTAATATTGGCCAGTGATGGACTTTGGGACGTAATGAGTAACCAAGAAGCTTGCGATTTT 1893
Query 922 GCTAGGAAACGGATCTTGA-TGTGGCACAAGAAGAACGGATCTTTGCCTTTAGCCGAGAG 980
|| |||| ||||||||| | |||||||||||||| ||| | ||||||||||| |||||
Sbjct 1894 GCGAGGAGGCGGATCTTGGCT-TGGCACAAGAAGAATGGAGCATTGCCTTTAGCTGAGAG 1952
Query 981 AGGTGTAGGGGAAGACCATGCGTGTCAAGCCGCGGCTGCTTATCTCTCGAAACTCGCTCT 1040
||||||||| |||||||| ||||||||||| ||||||| |||||||| ||||||||| |
Sbjct 1953 AGGTGTAGGAGAAGACCAAGCGTGTCAAGCTGCGGCTGAATATCTCTCCAAACTCGCTAT 2012
Query 1041 TCGAAA-GGGAAGCAAAGACAATGTCTCGATCATAGTGGTCGACTTGAAAGCTCAGAGAA 1099
|| ||| |||||||||||||||| |||| ||||||||| |||||||||||||||| ||||
Sbjct 2013 TC-AAATGGGAAGCAAAGACAATATCTCAATCATAGTGATCGACTTGAAAGCTCAAAGAA 2071
Query 1100 AGTTCAAGACCAGATCTTGA 1119
||||||||||||||||||||
Sbjct 2072 AGTTCAAGACCAGATCTTGA 2091
> AT1G17545.1 | Symbols: | Protein phosphatase 2C family protein
| chr1:6033109-6033908 FORWARD LENGTH=540
Length=540
Score = 296 bits (160), Expect = 3e-79
Identities = 180/189 (95%), Gaps = 3/189 (2%)
Strand=Plus/Plus
Query 493 AGACCTGTTTCTGGTTCTGGTTCTTC---TGATAGGATGGTTCTTCAGGCTGTTTCCCCT 549
||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||
Sbjct 346 AGACCTGTTTCTGGTTCTGTTTCTTCTGATGATAGGATGGTTCTTCAGGCTGTTTCCCCT 405
Query 550 GAGACCGTAGGATCAACTGCTGTGGTTGCTTTGGTTTGCTCATCACATATCATAGTTTCC 609
|||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 406 GAGACCGTCGGATCAACTGCTGTTGTTGCTTTGGTTTGCTCATCACATATCATAGTTTCC 465
Query 610 AACTGTGGTGATTCAAGAGTGGTTTTACTCCGCGGCAAAGAATCCATGCCTTTATCCGTT 669
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 466 AACTGTGGTGGTTCAAGAGTGGTTTTACTCCGCGGCAAAGAATCCATGCCTTTATCAGTT 525
Query 670 GATCACAAA 678
||||| |||
Sbjct 526 GATCAGAAA 534
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54869195685
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5