BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg911567
Length=552
Score E
Sequences producing significant alignments: (Bits) Value
AT1G17560.1 | Symbols: HLL | Ribosomal protein L14p/L23e family... 420 8e-117
> AT1G17560.1 | Symbols: HLL | Ribosomal protein L14p/L23e family
protein | chr1:6037464-6038692 REVERSE LENGTH=880
Length=880
Score = 420 bits (227), Expect = 8e-117
Identities = 258/272 (95%), Gaps = 6/272 (2%)
Strand=Plus/Plus
Query 1 ATGGCGACAACTTTAGCTTCCAGGCTCTCCAAAGCAGGACGTTCATTGCTTGGAGGTCTT 60
||||||||| |||||||||||| ||||||| || |||||||||||||||||||||||||
Sbjct 119 ATGGCGACAGCTTTAGCTTCCAAGCTCTCC-AA--AGGACGTTCATTGCTTGGAGGTCTT 175
Query 61 TGCAATGCTTTCTCTGGTTTGATG-AGT--GCCTCCAATGGAATGATGAATGGAAGCATC 117
|||||||||||||||||||||||| | | |||||||||||||||||||||||||||||
Sbjct 176 TGCAATGCTTTCTCTGGTTTGATGAATTCCTCCTCCAATGGAATGATGAATGGAAGCATC 235
Query 118 CTCTCTCAGCAACAACATAGGTCATTCATTCAAATGGGGACGATTCTCAAATCCGTGGAT 177
||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||
Sbjct 236 CTCTCTCAGCAACAACATAGGACATTCATTCAAATGGGGACGATTCTCAAATGCGTGGAT 295
Query 178 AACTCGGGTGCTAAAGAGGTGATGTGCATTCAATCCCTGAAAGGTAAGAAAGGAGCAAGA 237
|||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 296 AACTCGTGTGCTAAAGAGGTGATGTGCATTCAATCCCTGAGAGGTAAGAAAGGAGCAAGA 355
Query 238 CTTGGCGATATCATTGTTGGTTCAGTGAAAGA 269
||||||||||||||||||||||||||||||||
Sbjct 356 CTTGGCGATATCATTGTTGGTTCAGTGAAAGA 387
Score = 409 bits (221), Expect = 2e-113
Identities = 270/293 (92%), Gaps = 5/293 (2%)
Strand=Plus/Plus
Query 264 GAAAGACGCCATACCAAAAGGTAAAGTGAAGAAAGGGATGGTCGTGTACGGTGTGGTTGT 323
||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 418 GAAAGACGCTATCCCAAAAGGTAAAGTGAAGAAAGGGATGGTCGTGTACGGTGTGGTTGT 477
Query 324 GCGTGCTGCGATGCAGAAAGGACGTGCTGATGGAAGCCAAGTCAGGTTTGATGACAATGC 383
|||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||
Sbjct 478 GCGTGCTGCGATGCCTAAAGGACGTGCTGATGGAAGCCAAGTCAAGTTTGATGACAATGC 537
Query 384 GGTTGTAGTTGTGGGCATTAAGGAAAAGAA-GA--AGAAGAATACGGATGGTTCCAAGAG 440
|||||||||| ||||||||||||||||| | |||| ||| | |||||||||||||
Sbjct 538 CATTGTAGTTGTTGGCATTAAGGAAAAGAAAGGGCAGAATAATTCACATGGTTCCAAGAG 597
Query 441 -AAAATTTGAGTATAACCAACCGACTGGTACTCGAGTGTTTGGTCCTGTCCCCCACGAGA 499
||||| ||||| ||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct 598 GAAAATG-GAGTACAACCAACCGACTGGTACCCGAGTGTTTGGTCCTGTCCCGCACGAGA 656
Query 500 TGCGCCTCAGGAAACAGCTCAAGATCCTTACTTTGGCTCAGCACATTGTTTGA 552
||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 657 TGCGCCTCAGGAAACAGCTCAAGATCCTTTCTTTGGCTCAGCACATTGTTTGA 709
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 26473395469
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5