BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg911573
Length=1143
Score E
Sequences producing significant alignments: (Bits) Value
AT1G17615.1 | Symbols: | Disease resistance protein (TIR-NBS c... 1703 0.0
> AT1G17615.1 | Symbols: | Disease resistance protein (TIR-NBS
class) | chr1:6059441-6060667 FORWARD LENGTH=1143
Length=1143
Score = 1703 bits (922), Expect = 0.0
Identities = 1069/1140 (94%), Gaps = 9/1140 (1%)
Strand=Plus/Plus
Query 7 TCATCGTCTTCTTCTTCAACTACTCCACAAAAGTTCGATGTCTTTCTGAGTTTCAGAGGC 66
|||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||
Sbjct 10 TCATCGTCTTCTTCTTCAGCTACTCCACAAAAGTTCGACGTCTTTCTGAGTTTCAGAGGC 69
Query 67 AAGGACACTCGCAGGACCTTCATCAGCTTTCTTTACAAAGAACTCATTGGAATGAGTATT 126
||||||||||||||||||||||| ||||||||||||||||||||||||| |||| |||||
Sbjct 70 AAGGACACTCGCAGGACCTTCATTAGCTTTCTTTACAAAGAACTCATTGAAATGGGTATT 129
Query 127 CGAACTTTCAAAGACGACGTCGAACTCAAGAGTGGCCGTCGGATTGCTTCTGATCTCCTC 186
|||||||||||||||||||| |||||| ||||||| |||||||||||||| |||||||||
Sbjct 130 CGAACTTTCAAAGACGACGTTGAACTCCAGAGTGGTCGTCGGATTGCTTCAGATCTCCTC 189
Query 187 ATGGCTATCGAAAATTCCAAAATCGCCGTTGTGATTGTCTCAAAGAATTATC-CTGCGTC 245
|| |||||||| ||||||||||||||||||||| ||||||||||||| | |||||||
Sbjct 190 GCCGCGATCGAAAACTCCAAAATCGCCGTTGTGATTATCTCAAAGAATTA-CTCTGCGTC 248
Query 246 TCCCTGGTGTCTCCAAGAGCTAGAGATGATCATGGATGTCGAAAAGAAGGGTTCCCTCAT 305
||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||
Sbjct 249 TCCCTGGTGTCTCCAAGAGCTAGTGATGATCATGGATGTCGAAAAGAAGGGTTCCATCAT 308
Query 306 CGTTATGCCTATCTTTTACAACGTCGAGCCTGCTCATGTGAGGCGACAAATCGAAAAGGT 365
||||||||| |||||||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct 309 CGTTATGCCAATCTTTTACAACGTCGAGCCTGCTCATGTGAGAAGACAAATCGAACAGGT 368
Query 366 CGCTCAACAGTTTAGGAAACATGAA-AATAGGGAAAATTATGAGACTGTGGTATCATGGA 424
|||| |||||||||||||||||||| | ||||||||||||||||||||||| |||||||
Sbjct 369 CGCTAAACAGTTTAGGAAACATGAAGGA-AGGGAAAATTATGAGACTGTGGTGTCATGGA 427
Query 425 GACAAGCTCTGACCAATTTGGCCAGTATCTCCGGCCATTGTTCTCGTGATTGTGAAGATG 484
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 428 GACAAGCTCTGACCAATTTGGCCAGTATCTCCGGCCATTGTTCTCGTGATTGCGAAGATG 487
Query 485 ACTCCAAGCTACTCGACGAGATCACCAAGAGAATTACTGACATGTTGTTATTCTCTGCAA 544
|||| ||||||||||| ||||| |||||||||||| |||||| |||||||||| | ||
Sbjct 488 ACTCGAAGCTACTCGATGAGATAACCAAGAGAATTTCTGACA---TGTTATTCTCGGTAA 544
Query 545 CACCACCAAGTCATAGCATCAGTAACCAATTTGGATTTGATGCACACATGAAAGAGTTGT 604
||||||||||| | ||||||| ||||||| ||||||||||||||| ||||||||||||||
Sbjct 545 CACCACCAAGTGAGAGCATCAATAACCAACTTGGATTTGATGCACGCATGAAAGAGTTGT 604
Query 605 ATCCATTGTTAGAATT-GACTTCTAATGAAGGTGTGAGAGTGATTGGAATTTGGGCAAGA 663
|||||||||| || || || |||||||||||||||||||||| |||||||||||||||||
Sbjct 605 ATCCATTGTTGGATTTGGA-TTCTAATGAAGGTGTGAGAGTGGTTGGAATTTGGGCAAGA 663
Query 664 GGAGGTAATGGAAGATCAGCTCTAGCTAGATATGTTTATCAAAAGATCTTTAAGAAATTC 723
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 664 GGAGGTAATGGAAGATCAGCTCTAGCTAGATACGTTTATCAAAAGATCTTTAAGAAATTC 723
Query 724 CAAAGTCATTGTTTTCTCGAAAACGTCAAAGGGATTCCTCACGATTGTCAAATGTCCAAT 783
||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 724 CAAAGTCATTGTTTTCTCGAAAACGTCAAAGGGATCCCTCACGATTGTCAAATGTCGAAT 783
Query 784 CTAAGAGACGAGTTTCTTATCAGGATTCAAGGAGGGTACTCGAAGATGAAGACCTCAGGG 843
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 784 CTAAGAGACGAGTTTCTTATCAGGATTCAAGGAGGGTACTCGAGGATGAAGACCTCAGGG 843
Query 844 TTAATCAAAACAAGGCTCATGAGTCAGAAAGTACTACTTGTAGCTAACAATGTCGACAAA 903
|| || |||| ||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 844 TTGATAAAAAAAAGGCTCATGAGTCAGAAAGTTCTACTTGTGGCTAACAATGTCGACAAA 903
Query 904 CTCGAACAGTTGGATGCTCTTTCAGAAGATTTTAACTGTTTTGGTCCAGGTAGCCTAGTG 963
||||||||||| ||||||||| ||||| |||||||||||||||||||||| ||| |||||
Sbjct 904 CTCGAACAGTTAGATGCTCTTGCAGAATATTTTAACTGTTTTGGTCCAGGGAGCATAGTG 963
Query 964 ATCATAACTACACAAGACAAACAACTTCTTCTTGCGTTTGGGATAAAAGTTGTGTATGAA 1023
||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||
Sbjct 964 CTCATAACTACACAAGACAAACAACTTCTTGTTGCGTTTGGGATAAAGGTTGTGTATGAA 1023
Query 1024 GTTGAGTGCTTGAGATGCTTTGAAGTTCGTCAACTGTTTCGTCAAATCGGCTTTAGAGAG 1083
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1024 GTTGAGTGCTTGAGATGCTTTGAAGTTCGTCAACTGTTTCGTCAAATCGGCTTTAGGGAA 1083
Query 1084 AGAGATCTTTATGTTGGTTCCGAGTTGTCTTCGCCTATATCAGGGACTGAATCTTCTTGA 1143
||||||||| |||| ||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 1084 AGAGATCTTAATGTCGGTTCCGAGTTGTCTTCACCTATATCCGGGACTGAATCTTCTTGA 1143
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56074008765
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5