BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg911578
Length=972
Score E
Sequences producing significant alignments: (Bits) Value
AT1G17665.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 1463 0.0
> AT1G17665.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: endomembrane system; EXPRESSED IN: 15 plant
structures; EXPRESSED DURING: 11 growth stages; Has 149 Blast
hits to 146 proteins in 39 species: Archae - 0; Bacteria
- 4; Metazoa - 21; Fungi - 5; Plants - 30; Viruses - 0; Other
Eukaryotes - 89 (source: NCBI BLink). | chr1:6072253-6074484
REVERSE LENGTH=1196
Length=1196
Score = 1463 bits (792), Expect = 0.0
Identities = 924/985 (94%), Gaps = 20/985 (2%)
Strand=Plus/Plus
Query 1 ATGGCGGCTCCGCATTTCACACAACTCAAAATTACACTAAACCCTCTCATGTATTCCTTT 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1 ATGGCGGCTCCGCATTTCACACAACTCAAAATTACACTAAACCCTCTCATGTATCCCTTT 60
Query 61 CTCATCTTATCTCTACTAACTCTCGCCCTCCTCTTATTCGTCTCCGCCATCTTCTTTCTC 120
||| |||||||||||||||||||||||||| ||| |||||||||||||||||||||||||
Sbjct 61 CTCGTCTTATCTCTACTAACTCTCGCCCTCTTCTCATTCGTCTCCGCCATCTTCTTTCTC 120
Query 121 CTCAAAGCTTCCCGCAGCAGAGCTGCTTCGTACAGCCAGAAACTCTTATCCGAATCCGAA 180
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 121 CTCAAAGCTTCCCGCAGCAGAGCTGCTTTGTACAGCCAGAAACTCTTATCCGAATCCGAA 180
Query 181 ACCAAACTCGAACCAGAATCGTCTC---C----A--TCCGACGGAGCCCAGTACCAAACC 231
||||||||| ||||||||||||||| | | ||||||| ||||||||||||||||
Sbjct 181 ACCAAACTCCAACCAGAATCGTCTCTATCGGAGATTTCCGACGAAGCCCAGTACCAAACC 240
Query 232 CATGAAAATGACCCGACCCATTTGACGAATTCGCGAGTCTACGAGTTACTGCTCTCCGAT 291
||||||||||| |||||||||||||||||||||||| |||| ||||||||||||||||||
Sbjct 241 CATGAAAATGAACCGACCCATTTGACGAATTCGCGACTCTATGAGTTACTGCTCTCCGAT 300
Query 292 AAGAA--A-GAGGATTCGGATTGGGAAGGAGATCATGTgaaaaagaagacgaagaagaag 348
||||| | || ||||||||||||||||||||||||||||||||| | | ||||||||||
Sbjct 301 AAGAAGGAGGATGATTCGGATTGGGAAGGAGATCATGTGAAAAAG-A-A-GAAGAAGAAG 357
Query 349 aagaagaagcgaggtaagaagaagaaATCAGACCTAAGAGGAGATGAATCCGGCGGCGAA 408
|||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 358 AAGAAGAATCGAGGTAAGAAGAAGAAATCAGACATAAGAGGAGATGAATCCGGCGGCGAA 417
Query 409 AAGCAGCTCGGCGA---AGGAGATGGGGTTGTTATGAATCCGAGGACTGGCTCGATTTCG 465
||||||||||| || || ||||||| ||||| ||||||||||||| | ||||||||||
Sbjct 418 AAGCAGCTCGGTGAGGGAGAAGATGGGCTTGTTTTGAATCCGAGGACAGACTCGATTTCG 477
Query 466 ATATCGGAAAAGAAACCAGAGTTTGTTTGTTTGTACCCATTTACCTCGACGAGCAGTGCT 525
||||||||||| ||||| |||||||||||||| || || ||||| |||||||||||||||
Sbjct 478 ATATCGGAAAACAAACCGGAGTTTGTTTGTTTATATCCTTTTACATCGACGAGCAGTGCT 537
Query 526 ACGCAGAGGAAGATTAAGCAGCAATACGATCAGCTTGTTAAATGCAATAATGCCAAAGGA 585
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 538 ACGCAGAGGAAGATTAAGCAGCAATACGATCAGCTTGTTAAATGCAATAATGCCAAAGGA 597
Query 586 TTGACACTAGCTCAGGTTGGAGAGTTTGCTAATTGTTTGATACAAGCCAAAAATGAGCTA 645
|||||||||||||||||||| ||||||||||||||||||||| ||||||||||||| |||
Sbjct 598 TTGACACTAGCTCAGGTTGGGGAGTTTGCTAATTGTTTGATAGAAGCCAAAAATGAACTA 657
Query 646 CAGCACAAGTCAGAAGTAATCAAGCGCAAGTTTTCAATAACCAAAGCCCTTCT-TTTCAA 704
|| |||||||||||||||||||||||||||||||||||||| ||||||||||| ||| ||
Sbjct 658 CAACACAAGTCAGAAGTAATCAAGCGCAAGTTTTCAATAACAAAAGCCCTTCTCTTT-AA 716
Query 705 GGCTGATAGATCTTCCTTTGACCGACTTCGTCAACAGATCTATAAGCTAGAGATGGAACA 764
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 717 GGCTGATAGATCTTCCTTTGACCGACTTCGTCAACAGATCTATAAGCTGGAGATGGAACA 776
Query 765 AAAAAGAGTAGAAGAAGATGCACTTGTATATAATTGGCTCCAGCAACAGCTAAAACTTTC 824
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 777 AAAAAGAGTAGAAGAAGATGCACTTGTATATAATTGGCTCCAGCAACAGCTTAAACTCTC 836
Query 825 ACCTGCATACAAAAAGGTTCTTGAAATAAGCGCTTCCATGGAACTCAAAGACAAATCGAG 884
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 837 ACCTGCATACAAAAAGGTTCTTGAAATAAGCGCTTCCATGGAACTCAAAGACAAATCGAG 896
Query 885 TATAGAGTTAGACAATCCTGATGATGAATTTTCAGACATCTCCTTCGAAGAGCTACTGGA 944
| ||||||||||||||| |||||||||||||||||||| ||||||||||||||| ||||
Sbjct 897 CACAGAGTTAGACAATCCAGATGATGAATTTTCAGACATTTCCTTCGAAGAGCTATTGGA 956
Query 945 ACAGGAGAAGAAAGATTCCTTTTGG 969
|||||| |||||||| || ||||||
Sbjct 957 ACAGGAAAAGAAAGACTCGTTTTGG 981
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47571737209
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5