BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg911600
Length=1347
Score E
Sequences producing significant alignments: (Bits) Value
AT1G17850.2 | Symbols: | Rhodanese/Cell cycle control phosphat... 1973 0.0
> AT1G17850.2 | Symbols: | Rhodanese/Cell cycle control phosphatase
superfamily protein | chr1:6145926-6148940 REVERSE LENGTH=2011
Length=2011
Score = 1973 bits (1068), Expect = 0.0
Identities = 1260/1353 (93%), Gaps = 12/1353 (1%)
Strand=Plus/Plus
Query 1 ATGAGAGTTTCGCCGGCGGTAACACTCTCAGTCTCTTTAACTATTCCACTACCTCTTGCT 60
||||||||||||||||||| |||||||||||||||||| |||| |||||||||| | ||
Sbjct 121 ATGAGAGTTTCGCCGGCGGCAACACTCTCAGTCTCTTTGACTACTCCACTACCTATAACT 180
Query 61 TCAACCAAAGCTCGTTTCTCCGGCGTCCCTTTTCGATTCAAACAATATGTTTTCAATTAT 120
| ||||||||||||||||||||||| || || ||| |||||||||||||||| | | ||
Sbjct 181 TTAACCAAAGCTCGTTTCTCCGGCGAACCATTGCGACTCAAACAATATGTTTTGAGTAAT 240
Query 121 CAGATTCT-CTCGCGACCAGGACGTCTCGTCGT-AGAG---AAACCCACCAGAAGATGGA 175
|||||| | ||| |||||| || |||| || | |||| |||||||||||||||||||
Sbjct 241 CAGATT-TGCTCCCGACCAAAACATCTCCTC-TCAGAGTTTAAACCCACCAGAAGATGGA 298
Query 176 CCTTCTCCTGCAAATGCCGAAACAGAGGAAGAAATGGTTACGCGAAATTCGATGACGAAG 235
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 299 CCTTCTCCTGCAAATGCCGTAACAGAGGAAGAAATGGTTACGCGAAATTCGATGACGAAG 358
Query 236 GAGAAGATTTCATTGTGGTAAACTTCTATCGGTTTGTATCAATCGGAGATCCTGAGGCTG 295
|||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 359 GAGAAGATTTCATTGTTGTTAACTTCTATCGGTTTGTATCAATCGGAGATCCTGAGGCTG 418
Query 296 TGATTGAGAAGCACCTCTCTTTCTTAAAGGATTTGAATATACGAGGTCGGATATATCTCA 355
|||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 419 AGATTGAGAAGCACCTCTCATTCTTAAAGGATTTGAATATACGAGGTCGAATATATCTCA 478
Query 356 ATGAACAAGGAATTAACGCGCAGTACAGTGGACCATCTAAAGATGCTCTTGCATATGTTG 415
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 479 ATGAACAAGGAATCAACGCGCAGTACAGTGGACCATCTAAAGATGCTCTTGCATATGTTG 538
Query 416 AATGGTTAAAAGGAGATGAAAGATTCTCGGATTTGCTTGTCCAGATGTCTCCTGCTATTA 475
||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| |
Sbjct 539 AATGGTTAAAAGGAGATGATAGATTCTCGGATTTGCTTGTCCAGATGTCTCCCGCTATGA 598
Query 476 AT-GGTCATGCATTCCCTAAGTTGAAGCTACAGAACAAACCCTCCTTAGTTCAGTATGAA 534
|| || |||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 599 ATAGG-CATGCATTCCCTAAGTTGAAGCTACAGAACAAACCCTCCTTAGTGCAGTATGAG 657
Query 535 GGAGGAATTTCACACCTTCCTCTACTTGATCCACCGATGCGAGCAAAACCCTTAGAACCA 594
|||||||||||||||||||| |||||||||||||| |||||||||||||||||||| |||
Sbjct 658 GGAGGAATTTCACACCTTCCCCTACTTGATCCACCCATGCGAGCAAAACCCTTAGAGCCA 717
Query 595 TCTGAATGGAAAAGAAAACTGAAAGACTTAACGGATGATGATGAAGCATCACCTTCATCA 654
|||||||||||||| |||||||||||||||||||||||||||||||| ||||||||| |
Sbjct 718 TCTGAATGGAAAAGGAAACTGAAAGACTTAACGGATGATGATGAAGCCTCACCTTCA--A 775
Query 655 AGTAGTGGCAGAAGCTGCATATTATTGGATGTCAGAAACGGTTATGAGTGGGATGTTGGT 714
| |||||||| ||| | ||||||||||||||||||||| |||||||||||||||||||||
Sbjct 776 A-TAGTGGCAAAAGTTACATATTATTGGATGTCAGAAATGGTTATGAGTGGGATGTTGGT 834
Query 715 CATTTTCGTGGGGCACGTAGACCTGAAGTTGATTGCTTTCGGAACACTTCTTTTGGACTA 774
|| ||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||
Sbjct 835 CACTTTCGTGGGGCACATAGACCTGAAGTTGATTGCTTTCGGAACACTTCTTTTGGGCTA 894
Query 775 TCTGATGAAAAGGAAGCTCCTTCAGACCCTTTGATAAATGTTGACAAGGAAAAGACAGAT 834
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 895 TCTGATGAAAAGGAAGCCCCTTCAGACCCTTTGATAAATGTTGACAAGGAAAAGACAGAT 954
Query 835 ATACTGATGTACTGTACTGGAGGCATACGCTGCGATGTATATTCAACAGTTTTAAGACAG 894
||||||||||| ||||||||||| ||||| || ||||| |||||||||||||| ||||||
Sbjct 955 ATACTGATGTATTGTACTGGAGGTATACGTTGTGATGTGTATTCAACAGTTTTGAGACAG 1014
Query 895 CGGGGTTTCAAGAACCTGTATACACTGAAGGGTGGAGTTTCCCATTATCTGGAAGAAGAA 954
|||||||||||||||||||||||| |||||||||||||||||||||| || ||||||||
Sbjct 1015 CGGGGTTTCAAGAACCTGTATACATTGAAGGGTGGAGTTTCCCATTACCTTAAAGAAGAA 1074
Query 955 GGCACAGCTGAATGGGTTGGAAATCTGTTTGTGTTTGACTCTCGTCTCTCTCTCCCACCA 1014
||||| || |||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1075 GGCACCGCCGAATGGGTTGGAAATCTGTTTGTGTTTGACTCTCGTCTTTCTCTCCCACCA 1134
Query 1015 GTTGCCTACAGTGACAAGGCCGTGGATAAACCCGGAAGTGACAACGCCGTGGATAAAGCC 1074
| |||||||| |||||| | |||||||||| ||| | |||| |||| ||||||| |||||
Sbjct 1135 GCTGCCTACAATGACAACGTCGTGGATAAAGCCGTAGGTGATAACGTCGTGGATGAAGCC 1194
Query 1075 GGAAGAACTCCACAAACGCCCGTGGATACAAGTTTTGCAAAATGCTATATTTGTGATTCA 1134
|||||||||||||||||||||||||||||||||||||||| ||||||| ||||| ||||
Sbjct 1195 GGAAGAACTCCACAAACGCCCGTGGATACAAGTTTTGCAAGATGCTATCTTTGTAATTCC 1254
Query 1135 CAAGTTCAGGAACTAAGACATCGGAACTGTGCTAACCTTGACTGCAATCGGCTTTTCTTA 1194
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1255 CAAGTTCAGGAACTAAGACATCGGAACTGTGCTAACCTTGACTGCAATCGGCTTTTCTTA 1314
Query 1195 TGCTGTGCAGAATGTGTTGTCGACTTGAAGGGATGTTGCTGTTCAAACTGCATTACTGCT 1254
|||||||||||||||||||||||||||||||| |||||||||||| ||||||||| ||||
Sbjct 1315 TGCTGTGCAGAATGTGTTGTCGACTTGAAGGGTTGTTGCTGTTCAGACTGCATTAGTGCT 1374
Query 1255 CCCCGACTTAGACCTGTCTTGCATGGAGTAAAGAGATATGAGAAATGGCATGTATATCGT 1314
||| |||||||||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1375 CCCAGACTTAGACCGGTCTTGCATGGAGTAAAGAGATATGAAAAATGGCATGTATATCGC 1434
Query 1315 GATTCAGAAGTGCAAACTGCGCCATTGGTTTGA 1347
|||||||||| ||||| ||||||||||||||||
Sbjct 1435 GATTCAGAAGAGCAAAATGCGCCATTGGTTTGA 1467
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66314919945
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5