BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg911609
Length=624
Score E
Sequences producing significant alignments: (Bits) Value
AT2G29420.1 | Symbols: ATGSTU7, GST25, GSTU7 | glutathione S-tr... 774 0.0
> AT2G29420.1 | Symbols: ATGSTU7, GST25, GSTU7 | glutathione S-transferase
tau 7 | chr2:12617936-12618899 REVERSE LENGTH=887
Length=887
Score = 774 bits (419), Expect = 0.0
Identities = 498/537 (93%), Gaps = 2/537 (0%)
Strand=Plus/Plus
Query 1 ATGGCGGAGAGATCATATTCAGAGGAAGTGAAGCTTTTGGGAATGTGGGCGAGTCCTTTT 60
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 29 ATGGCGGAGAGATCAAATTCAGAGGAAGTGAAGCTTTTGGGAATGTGGGCGAGTCCTTTT 88
Query 61 AGTCGTAGGATTGAGATTGCTCCTACACTTAAAGGTGTTTCTTACGAATT-CTCAGAGGA 119
||||| |||||||||||||||| ||| |||||||||||||| || || || || ||| |
Sbjct 89 AGTCGGAGGATTGAGATTGCTCTTACGCTTAAAGGTGTTTCGTATGAGTTCCT-GGAGCA 147
Query 120 AGATATCACTAACAAGAGCTCTTTGTTGCTTCAGTTGAATCCGGTTTATAAGATGATTCC 179
||||||||| ||||||||||||||||||||||| |||||||||||| |||||||||||||
Sbjct 148 AGATATCACAAACAAGAGCTCTTTGTTGCTTCAATTGAATCCGGTTCATAAGATGATTCC 207
Query 180 GGTTCTTGTTCATAATGGTAAACCGATTTCTGAACCACTTGTGATTCTTGAGTATATTGA 239
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 208 GGTTCTTGTTCATAATGGTAAACCGATTTCTGAATCACTTGTGATTCTTGAGTATATTGA 267
Query 240 TGAGACTTGGAGAGACAATCCGATTCTTCCTCAAGATCCGTATGAGAGAGCTATGGCTCG 299
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 268 TGAGACTTGGAGAGACAATCCGATTCTTCCTCAAGATCCGTATGAGAGAACTATGGCTCG 327
Query 300 ATTCTGGGCTAAATTTGTTGATGAACATATTTATGTGACGGCTATGAAAGTGGTGGGGAA 359
||||||| ||||||| || |||||||| |||||||||||||| |||||||| ||||||||
Sbjct 328 ATTCTGGTCTAAATTCGTCGATGAACAGATTTATGTGACGGCGATGAAAGTTGTGGGGAA 387
Query 360 GATCAGAGAAGAGAGAGATGCGGTGGTTGAAGCGACGAGAGATTTGTTGATGTTTTTGGA 419
|| | || ||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 388 GACCGGAAAAGAGAGAGATGCTGTGGTTGAAGCGACGAGAGATTTGTTGATGTTTTTGGA 447
Query 420 GAAAGAACTCGTTGGGAAAGAtttttttGGAGGGAGAAGTTTGGGGTTTGTGGATATTGT 479
|||||| || ||||||||||||||| | || |||| |||||| |||||||||||||||||
Sbjct 448 GAAAGAGCTTGTTGGGAAAGATTTTCTCGGTGGGAAAAGTTTAGGGTTTGTGGATATTGT 507
Query 480 GGCGACGTTGGTGGCGTTTTGGTTGATGAGGACGGAGGATATCGTCGGAGTTAAGGT 536
|||||| ||||||||||||||| ||||||| |||||||| |||||||| || |||||
Sbjct 508 GGCGACTTTGGTGGCGTTTTGGCTGATGAGAACGGAGGAGATCGTCGGGGTAAAGGT 564
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30090254053
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5