BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg911616
Length=900
Score E
Sequences producing significant alignments: (Bits) Value
AT1G18020.1 | Symbols: | FMN-linked oxidoreductases superfamil... 577 7e-164
AT1G17990.1 | Symbols: | FMN-linked oxidoreductases superfamil... 577 7e-164
> AT1G18020.1 | Symbols: | FMN-linked oxidoreductases superfamily
protein | chr1:6202249-6203918 FORWARD LENGTH=1179
Length=1179
Score = 577 bits (312), Expect = 7e-164
Identities = 363/388 (94%), Gaps = 2/388 (1%)
Strand=Plus/Plus
Query 1 ATGGAGACAAAACAGAGTATCCCTCTCCTCGCGCCCTATAAGATGAGACTCTTCAATCTT 60
|||||||| ||||||||||||||||||||| ||||||||||||| ||| ||||||||||
Sbjct 24 ATGGAGACTAAACAGAGTATCCCTCTCCTCATGCCCTATAAGATGGGACCCTTCAATCTT 83
Query 61 TCTCACAGGGTTGTTCTT-GCGCCATTGACGAGATCTCGATCGTATGGTAGCATTCCTCA 119
||||||||||||||| || ||||||||||| ||||| |||||||||||| |||||||||
Sbjct 84 TCTCACAGGGTTGTT-TTGGCGCCATTGACTAGATCGAGATCGTATGGTAACATTCCTCA 142
Query 120 GCCTCATGTCAAATTATATTACACTCAGAGGACAACACCTGGTGGACTTCTTATTTCCGA 179
|||| ||| ||||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 143 GCCTAATGCCAAATTATATTACACTCAGAGAACAACACCTGGTGGTCTTCTTATTTCCGA 202
Query 180 AGCCTGTGCAGTGTCCGAGACATCATTGGGCTATCCGGATATACCTGGAATATGGACCAG 239
| |||||| ||| ||||||||||||||||||||||||||| |||||||| |||||| |||
Sbjct 203 ATCCTGTGTAGTCTCCGAGACATCATTGGGCTATCCGGATTTACCTGGATTATGGAACAG 262
Query 240 AGAACAAGTGGAGGCATGGAAGCCCATCGTGGATGCGGTTCATTCGCAAGGCGGTATCTT 299
||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 263 AGACCAAGTGGAGGCATGGAAGCCCATCGTGGATGCGGTTCATTCGAAAGGCGGTATCTT 322
Query 300 CTTCTGCCAGATTTGGCACGGTGACAGAGTTTTTCATCAAGACCAGCCAAATGGGGAAGC 359
|||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||
Sbjct 323 CTTCTGCCAGATTTGGCATGGTGGCAGAGTTTTTCATCAAGACCAGCCAAATGGGGAAGC 382
Query 360 ACCCGTCTCCTCTACAGACAAGCCATTG 387
||||||||||||||||||||||||||||
Sbjct 383 ACCCGTCTCCTCTACAGACAAGCCATTG 410
Score = 540 bits (292), Expect = 1e-152
Identities = 355/385 (92%), Gaps = 5/385 (1%)
Strand=Plus/Plus
Query 415 GGCTTCGATGGCGTGGAGGTTCACGGCGCACATGGTTACCTGATCGATCAGTTCCTGAAA 474
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 525 GGCTTCGATGGAGTGGAGGTTCACGGCGCACATGGTTACCTGATCGATCAGTTCCTGAAA 584
Query 475 GACAAAGTGAATGACAGAAGTGATGAATACGGTGGGTCACTCGAGAACCGCTGTAGATTT 534
||||||||||||||||||||||| |||| ||||||||| | ||||||||||||||||||
Sbjct 585 GACAAAGTGAATGACAGAAGTGACCAATATGGTGGGTCATTAGAGAACCGCTGTAGATTT 644
Query 535 GCTCTGGAAGTAATCGAAGCAGTGGTGAACGAGATCGGTCCAGATCGTGTTGGAATCAGA 594
||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 645 GCTCTTGAAGTAATCGAAGCAGTGGTGAACGAGATCGGTTCAGATCGTGTTGGAATCAGA 704
Query 595 CTCTCGCCATTCGCAGATTACATGGAGTCCGGAGACTCGAATCCAGAAGCATTAGGGCTC 654
||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 705 CTCTCGCCATTTGCAGATTACATGGAGTCAGGAGACTCGAATCCAGAAGCATTAGGGCTC 764
Query 655 TACCTGGTGCAAGCTATGAACAAGCATGG-A---A-TCCTTTACTGTCACTTAGTTGAAC 709
||||||||||||||||||||||||||||| | | || | ||| ||||| | |||||||
Sbjct 765 TACCTGGTGCAAGCTATGAACAAGCATGGCATGGAGTCGTCTACGGTCACATGGTTGAAC 824
Query 710 CTAGAATGAAAACCCCTGAAGGAATCTTTGAGTGCAAGGAATCGCTTACTCCGATGAGAA 769
||||||||||||||| |||||||||||| || |||| |||||||||||| || ||| |||
Sbjct 825 CTAGAATGAAAACCCTTGAAGGAATCTTCGAATGCACGGAATCGCTTACGCCCATGCGAA 884
Query 770 TTGCCTTCAAAGGAACGTTCATAGT 794
||||||||||| |||||||||||
Sbjct 885 AAGCCTTCAAAGGTACGTTCATAGT 909
Score = 119 bits (64), Expect = 5e-26
Identities = 75/80 (94%), Gaps = 2/80 (3%)
Strand=Plus/Plus
Query 822 ACCGATCTTGTGGCTTATGGAAGGACGTTCTTGGCGAATCCGGATCTGCTC-AGGAGATT 880
||||||||||||||||||||| || ||||||||||||||||||||||| | ||||||||
Sbjct 962 ACCGATCTTGTGGCTTATGGACGGCCGTTCTTGGCGAATCCGGATCTG-ACGAGGAGATT 1020
Query 881 CGAACTCAATGAGCCGTTGA 900
||||||||||||||||||||
Sbjct 1021 CGAACTCAATGAGCCGTTGA 1040
> AT1G17990.1 | Symbols: | FMN-linked oxidoreductases superfamily
protein | chr1:6192071-6194093 REVERSE LENGTH=1532
Length=1532
Score = 577 bits (312), Expect = 7e-164
Identities = 363/388 (94%), Gaps = 2/388 (1%)
Strand=Plus/Plus
Query 1 ATGGAGACAAAACAGAGTATCCCTCTCCTCGCGCCCTATAAGATGAGACTCTTCAATCTT 60
|||||||| ||||||||||||||||||||| ||||||||||||| ||| ||||||||||
Sbjct 339 ATGGAGACTAAACAGAGTATCCCTCTCCTCATGCCCTATAAGATGGGACCCTTCAATCTT 398
Query 61 TCTCACAGGGTTGTTCTT-GCGCCATTGACGAGATCTCGATCGTATGGTAGCATTCCTCA 119
||||||||||||||| || ||||||||||| ||||| |||||||||||| |||||||||
Sbjct 399 TCTCACAGGGTTGTT-TTGGCGCCATTGACTAGATCGAGATCGTATGGTAACATTCCTCA 457
Query 120 GCCTCATGTCAAATTATATTACACTCAGAGGACAACACCTGGTGGACTTCTTATTTCCGA 179
|||| ||| ||||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 458 GCCTAATGCCAAATTATATTACACTCAGAGAACAACACCTGGTGGTCTTCTTATTTCCGA 517
Query 180 AGCCTGTGCAGTGTCCGAGACATCATTGGGCTATCCGGATATACCTGGAATATGGACCAG 239
| |||||| ||| ||||||||||||||||||||||||||| |||||||| |||||| |||
Sbjct 518 ATCCTGTGTAGTCTCCGAGACATCATTGGGCTATCCGGATTTACCTGGATTATGGAACAG 577
Query 240 AGAACAAGTGGAGGCATGGAAGCCCATCGTGGATGCGGTTCATTCGCAAGGCGGTATCTT 299
||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 578 AGACCAAGTGGAGGCATGGAAGCCCATCGTGGATGCGGTTCATTCGAAAGGCGGTATCTT 637
Query 300 CTTCTGCCAGATTTGGCACGGTGACAGAGTTTTTCATCAAGACCAGCCAAATGGGGAAGC 359
|||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||
Sbjct 638 CTTCTGCCAGATTTGGCATGGTGGCAGAGTTTTTCATCAAGACCAGCCAAATGGGGAAGC 697
Query 360 ACCCGTCTCCTCTACAGACAAGCCATTG 387
||||||||||||||||||||||||||||
Sbjct 698 ACCCGTCTCCTCTACAGACAAGCCATTG 725
Score = 540 bits (292), Expect = 1e-152
Identities = 355/385 (92%), Gaps = 5/385 (1%)
Strand=Plus/Plus
Query 415 GGCTTCGATGGCGTGGAGGTTCACGGCGCACATGGTTACCTGATCGATCAGTTCCTGAAA 474
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 840 GGCTTCGATGGAGTGGAGGTTCACGGCGCACATGGTTACCTGATCGATCAGTTCCTGAAA 899
Query 475 GACAAAGTGAATGACAGAAGTGATGAATACGGTGGGTCACTCGAGAACCGCTGTAGATTT 534
||||||||||||||||||||||| |||| ||||||||| | ||||||||||||||||||
Sbjct 900 GACAAAGTGAATGACAGAAGTGACCAATATGGTGGGTCATTAGAGAACCGCTGTAGATTT 959
Query 535 GCTCTGGAAGTAATCGAAGCAGTGGTGAACGAGATCGGTCCAGATCGTGTTGGAATCAGA 594
||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 960 GCTCTTGAAGTAATCGAAGCAGTGGTGAACGAGATCGGTTCAGATCGTGTTGGAATCAGA 1019
Query 595 CTCTCGCCATTCGCAGATTACATGGAGTCCGGAGACTCGAATCCAGAAGCATTAGGGCTC 654
||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1020 CTCTCGCCATTTGCAGATTACATGGAGTCAGGAGACTCGAATCCAGAAGCATTAGGGCTC 1079
Query 655 TACCTGGTGCAAGCTATGAACAAGCATGG-A---A-TCCTTTACTGTCACTTAGTTGAAC 709
||||||||||||||||||||||||||||| | | || | ||| ||||| | |||||||
Sbjct 1080 TACCTGGTGCAAGCTATGAACAAGCATGGCATGGAGTCGTCTACGGTCACATGGTTGAAC 1139
Query 710 CTAGAATGAAAACCCCTGAAGGAATCTTTGAGTGCAAGGAATCGCTTACTCCGATGAGAA 769
||||||||||||||| |||||||||||| || |||| |||||||||||| || ||| |||
Sbjct 1140 CTAGAATGAAAACCCTTGAAGGAATCTTCGAATGCACGGAATCGCTTACGCCCATGCGAA 1199
Query 770 TTGCCTTCAAAGGAACGTTCATAGT 794
||||||||||| |||||||||||
Sbjct 1200 AAGCCTTCAAAGGTACGTTCATAGT 1224
Score = 119 bits (64), Expect = 5e-26
Identities = 75/80 (94%), Gaps = 2/80 (3%)
Strand=Plus/Plus
Query 822 ACCGATCTTGTGGCTTATGGAAGGACGTTCTTGGCGAATCCGGATCTGCTC-AGGAGATT 880
||||||||||||||||||||| || ||||||||||||||||||||||| | ||||||||
Sbjct 1277 ACCGATCTTGTGGCTTATGGACGGCCGTTCTTGGCGAATCCGGATCTG-ACGAGGAGATT 1335
Query 881 CGAACTCAATGAGCCGTTGA 900
||||||||||||||||||||
Sbjct 1336 CGAACTCAATGAGCCGTTGA 1355
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43954878625
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5