BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg911632
Length=690
Score E
Sequences producing significant alignments: (Bits) Value
AT1G18200.1 | Symbols: AtRABA6b, RABA6b | RAB GTPase homolog A6... 1114 0.0
AT1G18191.1 | Symbols: | Pseudogene of AT1G18200; AtRABA6b (Ar... 326 2e-88
> AT1G18200.1 | Symbols: AtRABA6b, RABA6b | RAB GTPase homolog
A6B | chr1:6265416-6266937 REVERSE LENGTH=852
Length=852
Score = 1114 bits (603), Expect = 0.0
Identities = 663/692 (96%), Gaps = 4/692 (1%)
Strand=Plus/Plus
Query 1 ATGGCGGAGGAATCGTATGACGAAGAGTGCGACTACCTATTCAAGGCGGTGCTGATAGGA 60
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 163 ATGGCGGAGGAATCGTACGACGAAGAGTGCGACTACCTATTCAAGGCGGTGCTGATAGGA 222
Query 61 GACTCCGCCGTCGGAAAATCAAACCT-CTTGTCGAGGTTCTCGAGGGATGAGTTTCGGTT 119
|||||||||||||||||||||||||| ||| |||||||||||||| ||||||||||||||
Sbjct 223 GACTCCGCCGTCGGAAAATCAAACCTCCTT-TCGAGGTTCTCGAGAGATGAGTTTCGGTT 281
Query 120 AGACTCTAAACCGACCATCGGAGTAGACTTTGCTTACCGGAATGTTCGCGTGGGTGATAA 179
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 282 AGACTCTAAACCGACCATCGGAGTAGACTTTGCTTACCGGAATGTTCGCGTGGGCGATAA 341
Query 180 GACTATCAAGGCTCAGATATGGGACACCGCCGGCCAAGAAAGATTTAGAGCAATAACGAG 239
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 342 GACTATAAAGGCTCAGATATGGGACACCGCCGGCCAAGAAAGATTTAGAGCAATAACGAG 401
Query 240 TTCCTATTACCGTGGAGCCTTGGGAGCTTTACTAATCTACGACATCACAAGACGAATCAC 299
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 402 TTCGTATTACCGTGGAGCCTTGGGAGCTTTACTAATCTACGACATCACAAGACGAATCAC 461
Query 300 TTTCAAAAACATTG-GAAAATGGTTGTCGGAGCTCAGAGGCTTCTCTAGTCCTGAGACCG 358
|||||||||||||| |||| |||||||||||||||||||||||||| ||||| ||||| |
Sbjct 462 TTTCAAAAACATTGAGAAA-TGGTTGTCGGAGCTCAGAGGCTTCTCCAGTCCCGAGACTG 520
Query 359 TCGTTGTTCTCGTAGGTAACAAATCCGATCTCGGGCAGTCTAGAGAAGTTGAAGAAGAAG 418
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 521 TCGTTGTTCTCGTCGGTAACAAATCCGATCTCGGGCAGTCTAGAGAAGTTGAAGAAGAAG 580
Query 419 AGGGTAAGACTCTAGCCGAATCAGAAGGTCTCTATTTTCTCGAAACATCAGCTTTAGAGA 478
|||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct 581 AGGGTAAGACTCTAGCAGAATCAGAAGGTCTCTATTTTCTCGAAACATCGGCTTTAGAGA 640
Query 479 ACCAAAATGTTGAGGAAGCGTTTCTAAGCATGATCGGACGGATACATGAGGTTTTGACTC 538
||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 641 ACCAAAACGTTGAAGAAGCGTTTCTAAGCATGATCGGACGGATACATGAGGTTTTGACTC 700
Query 539 AGAAGACCGCGGTAGACAATAGACCCAACGGTGACGGTAACAACGAAAGTAACGGTGCGG 598
|||| | || |||||||||||| ||||||||||||||||||||||||||||||||| |
Sbjct 701 AGAAAATCGTTTTAGACAATAGACTCAACGGTGACGGTAACAACGAAAGTAACGGTGCTG 760
Query 599 TCATTCCCCCCAGTAAAGAGATTGTGAATATTCATGAATTTACCGCCACTCGACCGTTGA 658
|| |||| ||| |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 761 TCGTTCCGCCCGGTAAAGAGATTGTGAATATTCATGAAGTTACCGCCACTCGACCGTTGA 820
Query 659 GTACTTCTTTGCCCAATTGTTGCTACAAGTAA 690
||||||||||| ||||||||||||||||||||
Sbjct 821 GTACTTCTTTGTCCAATTGTTGCTACAAGTAA 852
> AT1G18191.1 | Symbols: | Pseudogene of AT1G18200; AtRABA6b (Arabidopsis
Rab GTPase homolog A6b); GTP binding | chr1:6262054-6262330
REVERSE LENGTH=277
Length=277
Score = 326 bits (176), Expect = 2e-88
Identities = 250/284 (88%), Gaps = 11/284 (4%)
Strand=Plus/Plus
Query 407 TTGAAGAAGAAGAGGGTAAGACTCTAGCCGAATCAGAAGGTCTCTATTTTCTCGAAACAT 466
||||||| |||||| |||||||||| | | ||||||||||||||||||||||||||| |
Sbjct 5 TTGAAGACGAAGAGTTTAAGACTCTATCAG-ATCAGAAGGTCTCTATTTTCTCGAAACGT 63
Query 467 CAGCTTTAGAGAACCAAAATGTTGAGGAAGCGTTTCTAAGCATGATCGGACGGATACATG 526
| ||||||||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 64 CGGCTTTAGAGAACCAAAACGTCGAGGAAGCGTTTCTAAGCATGATCGGACGGATACATG 123
Query 527 AGGTTTTGACTCAGAAGACCGCGGTAGACAATAGACCCAACGGTGACGGTAACAACGAAA 586
|||||||||||||||||| | |||| | | | |||||||||||||| || ||||
Sbjct 124 AGGTTTTGACTCAGAAGATCTT--TAGA-A-T---C--AACGGTGACGGTAATAATGAAA 174
Query 587 GTAACGGTGCGGTCATTCCCCCCAGTAAAGAGATTGTGAATATTCATGAATTTACCGCCA 646
| |||| ||| ||||||||| || | |||||||||||||||||||||||| ||||||| |
Sbjct 175 GGAACGATGCAGTCATTCCCGCCGGCAAAGAGATTGTGAATATTCATGAAGTTACCGC-A 233
Query 647 CTCGACCGTTGAGTACTTCTTTGCCCAATTGTTGCTACAAGTAA 690
||||||||||||||||||||||| ||| ||||||||||||||||
Sbjct 234 CTCGACCGTTGAGTACTTCTTTGTCCACTTGTTGCTACAAGTAA 277
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33405707755
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5