BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg911640

Length=546
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G18280.1 | Symbols:  | Bifunctional inhibitor/lipid-transfer...   837    0.0  


> AT1G18280.1 | Symbols:  | Bifunctional inhibitor/lipid-transfer 
protein/seed storage 2S albumin superfamily protein | chr1:6294333-6295364 
FORWARD LENGTH=770
Length=770

 Score =  837 bits (453),  Expect = 0.0
 Identities = 503/527 (95%), Gaps = 3/527 (1%)
 Strand=Plus/Plus

Query  23   TCGCCGTCGCCGTCGTTCTTGTATTTTGCGCCGTTACGTCGTCTAATG--CACA-GACTA  79
            |||||||||||||||||||||||||||||  |||||||||||||||||  || | |||| 
Sbjct  87   TCGCCGTCGCCGTCGTTCTTGTATTTTGCTACGTTACGTCGTCTAATGCTCAGATGACTT  146

Query  80   CACCACCGAGCGGCGTTGCAGGAGGAGATGCACACTCACTGCCGTGTATTCAGAAACTGA  139
            ||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||
Sbjct  147  CACCACCGAGCGGCGGTGCAGGAGGAGACGCACACTCACTGCCGTGTATTCAGAAACTGA  206

Query  140  TGCCGTGTCAGCCGTATCTTCACTTGGTGACTCCGCCGCCGGCGTCGTGTTGCATGCCGT  199
            ||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||
Sbjct  207  TGCCGTGTCAGCCGTATCTTCACTTGGCGACTCCGCCGCCGGCGACGTGTTGCATGCCGT  266

Query  200  TGAATGAGATCGTAGCCAAAGACGCGACGTGTCTCTGCGCCGTCTTCAACAACGTCGATA  259
            ||||||||||||||||||||||||| |||||||||||||| ||||| |||||||| ||||
Sbjct  267  TGAATGAGATCGTAGCCAAAGACGCCACGTGTCTCTGCGCTGTCTTTAACAACGTTGATA  326

Query  260  TGCTCAAATCGCTTAACCTCACTAAAGAAAACGCTCTCGATCTCCCCAAAGCTTGTGGCG  319
            ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct  327  TGCTCAAATCGCTTAACCTCACTAAAGAAAACGCTCTCGATCTCCCCAAGGCTTGTGGCG  386

Query  320  CCAAAGCTGACGTGTCACTATGCAAAACCAGCGCCGGAACTAATTCGTCTTCAACACCGC  379
            ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct  387  CCAAAGCTGACGTGTCACTATGCAAAACCAGCGCCGGTACTAATTCGTCTTCAACACCGC  446

Query  380  CGGCAACCCCCAAAACTCCTCCAGCATCTTCCACCAGTACCGGAACAGGAAGCGGTTCAA  439
            |||||||||| ||||||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct  447  CGGCAACCCCGAAAACTCCTCCGGCATCTTCCACCAGTACCGGAACAGGAAGCGGATCAA  506

Query  440  CCGGAGATGCAGCTTCTTCGACGGCCAAACCAACAAGCTCAGCTCCGGCCATCAACTTCG  499
            ||||| |||||||| ||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct  507  CCGGAAATGCAGCTCCTTCGACGGCCAAGCCAACAAGCTCAGCCCCGGCCATCAACTTCG  566

Query  500  GTGGACTTAGCTTTGCATCGGCTGTCGTGGCAACACTCTTCTTCTGA  546
            |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  567  GTGGACTTAGCTTTGCATCGGCTGTCGTGGCAACACTCTTCTTCTGA  613



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 26171990587


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5