BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg911641

Length=309
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G18140.1 | Symbols:  | Chaperone DnaJ-domain superfamily pro...   263    8e-70


> AT5G18140.1 | Symbols:  | Chaperone DnaJ-domain superfamily protein 
| chr5:5998175-5999888 FORWARD LENGTH=1251
Length=1251

 Score =  263 bits (142),  Expect = 8e-70
 Identities = 156/163 (96%), Gaps = 0/163 (0%)
 Strand=Plus/Plus

Query  147   ATTTGCAAGCTGGCTCTGTGGAAAAGCAAGCAGCAGCGTGGTGGTTCTTGTGGTAGTGGC  206
             ||||||||||||||||||||| |||||||||||||||||||||||||||||| |||| ||
Sbjct  900   ATTTGCAAGCTGGCTCTGTGGGAAAGCAAGCAGCAGCGTGGTGGTTCTTGTGTTAGTAGC  959

Query  207   AATGTGGGTTGGCTCCAATTTAGCTAGACATGCTCCTCTTCCACAAGGAGCTCTTCTCAC  266
             ||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct  960   AATGTGGGTTGGCTCTAATTTAGCTAGACATGCTCCTCTTCCACAAGGTGCTCTTCTCAC  1019

Query  267   CCTCCTCTACATGTCAATCAAGCTTCAAGTTGACTCAACCTGA  309
             ||||||||||||||||||||| |||||||| ||||||||||||
Sbjct  1020  CCTCCTCTACATGTCAATCAAACTTCAAGTCGACTCAACCTGA  1062



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 14326308465


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5