BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg911646
Length=729
Score E
Sequences producing significant alignments: (Bits) Value
AT1G18335.1 | Symbols: | Acyl-CoA N-acyltransferases (NAT) sup... 1170 0.0
> AT1G18335.1 | Symbols: | Acyl-CoA N-acyltransferases (NAT) superfamily
protein | chr1:6309041-6311326 REVERSE LENGTH=1112
Length=1112
Score = 1170 bits (633), Expect = 0.0
Identities = 699/731 (96%), Gaps = 4/731 (1%)
Strand=Plus/Plus
Query 1 ATGGATTTGAAGAAACGGCGAAAGATTTTGGAGAAGAAAAAGACGATTCATGACCTTATC 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 82 ATGGATTTGAAGAAACGGCGAAAGATTTTGGAGAAGAAAAAGACGATTCATGACCTTATA 141
Query 61 AAACGAGCTTCTTCCATCGACGATCCTCTTTCTCCGTTTGATTCTTTCCGCCGTTACCGA 120
||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 142 AAAAGAGCTTCTTCCATTGACGATCCTCTTTCTCCGTTTGATTCTTTCCGCCGTTACCGA 201
Query 121 AGAAACGACTTATCTTTGTACCTGGAATCTGGCCATGGAGATAGACTTTCCTCGTCTGTG 180
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 202 AGAAACGACTTATCTTTGTACCTGGAATCTGGCCGTGGAGATAGACTTTCCTCGTCTGTG 261
Query 181 AAACAAT-ACATTCGAAATCTCTTGAAGACAAACATGGAAGGGTTTTATGGGTCTGATTG 239
||||| | |||||| ||| ||||||||||| |||||||||||||| ||||||||||||||
Sbjct 262 AAACA-TCACATTCAAAAACTCTTGAAGACGAACATGGAAGGGTTCTATGGGTCTGATTG 320
Query 240 GCCTATACAAGCAAAGGTGAAGCGCAAGGAGATGTCTTCCGCAGACGCACATTATATCTT 299
|||||||||||||||||||||||| ||||||||||||||||| || ||||||||||||||
Sbjct 321 GCCTATACAAGCAAAGGTGAAGCGTAAGGAGATGTCTTCCGCTGATGCACATTATATCTT 380
Query 300 TGTGCGTGAGCTGCGTTTTGGTAAAGCCTATGAAATATCTACTCGAAGAGCTTGCATGGA 359
||||||||||||||||||||||||||||||||| | |||||||| |||| ||||||||||
Sbjct 381 TGTGCGTGAGCTGCGTTTTGGTAAAGCCTATGAGACATCTACTCAAAGAACTTGCATGGA 440
Query 360 AGAGTGTAATCAGATAGCTGGATTTGTGCATTACCGGTTTACTTTAGAGGAAGAGATACC 419
|| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 441 AGGGTGTAATCAGATAGCTGGATTTGTGCATTACCGGTTTATTTTAGAGGAAGAGATACC 500
Query 420 TGTCCTTTATGTGTATGAAATACAGCTGGAATCCCGAGTTCAAGGAAAGGGACTAGGAGA 479
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 501 TGTCCTTTATGTGTATGAAATACAGCTGGAATCCCGGGTTCAAGGAAAGGGACTAGGAGA 560
Query 480 ATTTTTAATGCAGTTGATTGAGCTCATTGCTTCTAAGAATCGGATGAGTGCTATTGTGCT 539
||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 561 ATTTTTAATGCAGTTGATTGAGCTCATTGCTTCTAAGAATCGGATGAGTGCGATCGTGCT 620
Query 540 AACTGTTCTAACATCTAATGCATTGGCAATGACTTTCTACATGAGCATACT-AGGATACA 598
||||||||||||||||||||||||||||||||||||||||||||||| | | ||||||||
Sbjct 621 AACTGTTCTAACATCTAATGCATTGGCAATGACTTTCTACATGAGCA-AGTTAGGATACA 679
Query 599 GAATATCAAGCATTTCGCCCTCGAAAGCTAATCTTCCGACTTTCTCGGCGAAGTATGAGA 658
|||||||||||||||| ||||| |||||||||||||||||| |||||| |||||||||||
Sbjct 680 GAATATCAAGCATTTCTCCCTCAAAAGCTAATCTTCCGACTCTCTCGGTGAAGTATGAGA 739
Query 659 TACTTTGCAAAACATTTGATTCCGAAGCTAAATTTGTGTTGGAGAATGACGAAGAACCTA 718
||||||||||||| ||||||||||||||||||| ||||||||||||||| ||||||||||
Sbjct 740 TACTTTGCAAAACTTTTGATTCCGAAGCTAAATCTGTGTTGGAGAATGATGAAGAACCTA 799
Query 719 CCAAAGATTGA 729
|||||||||||
Sbjct 800 CCAAAGATTGA 810
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35364839488
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5