BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg911657
Length=1728
Score E
Sequences producing significant alignments: (Bits) Value
AT1G18420.1 | Symbols: | Aluminium activated malate transporte... 2617 0.0
AT1G18415.1 | Symbols: | other RNA | chr1:6343096-6345662 REVE... 516 3e-145
> AT1G18420.1 | Symbols: | Aluminium activated malate transporter
family protein | chr1:6343330-6345689 FORWARD LENGTH=1746
Length=1746
Score = 2617 bits (1417), Expect = 0.0
Identities = 1626/1725 (94%), Gaps = 21/1725 (1%)
Strand=Plus/Plus
Query 1 ATGGCGGCACCAAAGCTGGAATCTTTCAGGCGGGGTAGCATGTTCGACGGATCTTTCAGG 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGCGGCACCAAAGCTGGAATCTTTCAGGCGGGGTAGCATGTTCGACGGATCTTTCAGG 60
Query 61 CGAGGTAGTATGTTCGATGGTTCGTTTAGACAAAGCATGAGAGAGAGGCTTATCCCACAA 120
||||||||||||||||||||||||||| |||||||||||||||| |||||||| | | |
Sbjct 61 CGAGGTAGTATGTTCGATGGTTCGTTTCGACAAAGCATGAGAGATAGGCTTAT--C-CTA 117
Query 121 CAGAGCAGAAGCTATTCCAATGTCAACGACGATGACCAAACTTCCGTCCGTTGCTGCTCC 180
||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 118 CAGAGCAGAGGCTATTCCAATGTCAACGACGATGACAAAACTTCCGTCCGTTGCTGCTCC 177
Query 181 TACAGGTACTTCTCCGACAAGATCACTGGGGCTGTGAAGAAATCAAAAGATGTTTTGGTT 240
||||| |||||||| ||||||||||| |||| ||||||||||| ||| ||||||||||||
Sbjct 178 TACAGCTACTTCTCTGACAAGATCACGGGGGTTGTGAAGAAATTAAAGGATGTTTTGGTT 237
Query 241 ACGGCATGGGAGATGGGAACAGCTGACCCGAGGAAGATCATATTCTCGGCGAAGATGGGT 300
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 238 ACGGCATGGGAGATGGGAACAGCTGACCCGAGGAAGATGATATTCTCGGCGAAGATGGGT 297
Query 301 TTAGCTCTGACACTTACCTCTATCCTCATCTTCTTTAAGATCCCAGGATTAGAGCTCAGC 360
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 298 TTGGCTCTGACACTTACCTCTATCCTCATCTTCTTTAAGATCCCAGGATTAGAGCTCAGC 357
Query 361 AGCCACTATCTCTGGGCAATTCTTACAGTAGTTGTTATTTTCGAGTTCAGTATAGGAGCC 420
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 358 GGCCACTATCTCTGGGCAATTCTTACAGTAGTTGTTATCTTCGAGTTCAGTATAGGAGCC 417
Query 421 ACCTTTAGCAAAGGATGTAACCGGGGACTAGGAACATTGTCCGCTGGAGGATTGGCGCTT 480
|||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||
Sbjct 418 ACCTTTAGCAAAGGATGTAACCGGGGACTAGGAACATTGTCCGCAGGAGGACTGGCGCTT 477
Query 481 GGCATGGCTTGGATATCCGAGATGAGTGGAGACTGGGGAGA-GTTTCTTAATGCTGCTAG 539
|||||| |||||||||| ||||||| |||| | |||| ||| |||| |||||||||||||
Sbjct 478 GGCATGTCTTGGATATCGGAGATGACTGGAAATTGGGCAGATGTTT-TTAATGCTGCTAG 536
Query 540 CATCTTTGTAGTAGCCTTTTTTGCGACTTATGCAAAGCTATATCCAACGATGAAGCCATA 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 537 CATCTTTGTAGTAGCCTTTTTTGCGACTTATGCAAAGCTATATCCAACGATGAAGCCTTA 596
Query 600 TGAGTATGGATTCCGGGTGTTCTTGCTGACCTATTGCTACGTAATAGTGTCAGGATACAA 659
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 597 CGAGTACGGATTCCGGGTGTTCTTGCTGACCTATTGCTACGTAATAGTGTCAGGATACAA 656
Query 660 AACAGGGGAATTCATGGAAACAGCTGTTTCAAGGTTCCTTCTAATAGCTCTTGGTGCCTG 719
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
Sbjct 657 AACAGGGGAATTCATGGAAACAGCTGTTTCAAGGTTCCTTCTGATAGCTCTTGGTGCCAG 716
Query 720 TGTTGGCCTCGTAGTGAACACTTGCATTTATCCCATATGGGCTGGGGAAGATCTCCATAA 779
|||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 717 TGTTGGCCTCATAGTGAATACTTGCATTTATCCCATATGGGCTGGGGAAGATCTCCATAA 776
Query 780 CTTGGTCGCCAAGAACTTTGTGAACGTAGCGACTTCTTTGGAAGGTTGTGTGAATGGATA 839
||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||
Sbjct 777 CTTGGTCGCCAAGAACTTTGTGAACGTAGCGACTTCTCTGGAAGGTTGTGTGAACGGATA 836
Query 840 TCTCGAGTGCGTAGCATATGATACAATCCCATCTAGGATTCTGGTCTATGAAGCTGTCGC 899
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 837 TCTTGAGTGCGTAGCATATGATACAATCCCATCTAGGATTCTGGTCTATGAAGCTGTCGC 896
Query 900 GGAAGATCCAGTGTACAGTGGTTACAGATCAGCCGTTCAATCTACAAGCCAAGAAGACAC 959
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 897 GGAAGATCCAGTGTACAGTGGTTACAGATCAGCCGTTCAATCTACAAGCCAAGAAGACAC 956
Query 960 TCTGATGGGTTTTGCTTCATGGGAGCCACCACACGGACCGTACAAATCCTTTAGATATCC 1019
|||||| ||||||| ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 957 CCTGATGAGTTTTGCATCATGGGAGCCACCACACGGACCGTACAAATCCTTTAGATACCC 1016
Query 1020 ATGGGCAATGTATGTGAAAGTAGGTGGTGCATTGAGGCATTGTGCTATCATGGTCATGGC 1079
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1017 ATGGGCACTGTATGTGAAAGTAGGTGGTGCATTGAGGCATTGTGCTATCATGGTCATGGC 1076
Query 1080 GTTACATGGCTGCATTCTCTCAGAGATTCAGGCTGCAGAGGATAGAAGACGAGAATTTCG 1139
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1077 GTTACATGGCTGCATTCTCTCAGAGATCCAGGCTGCAGAGGATAGAAGACGAGAATTTCG 1136
Query 1140 TAATGAGCTTCAAAGAGTGGGGATCGAAGGAGCAAAAGTACTCAGATACATTGGGGAACA 1199
||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||| |
Sbjct 1137 TAATGAGCTTCAAAGAGTGGGAATCGAAGGAGCAAAAGTACTAAGATACATTGGGGAA-A 1195
Query 1200 AC-TGAAGAAGATGGAGAAACTAAACCCTATAGAAGACATACTCTACGAGATTCACCAAG 1258
| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1196 GCCTGAAGAAGATGGAGAAGCTAAACCCTATAGAAGACATACTCTACGAGATTCACCAAG 1255
Query 1259 CAGCCGAAGAACTACAGAGCAAAATCGACAAAAAATCGTACCTTCTCGTGAACGCCAAGA 1318
|||| |||||||||||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct 1256 CAGCAGAAGAACTACAGAGCAAAATCGACAAGAAATCATACCTTCTCGTGAACGCCAAGA 1315
Query 1319 ACTGGGAAATCGGGAATCGGCCTAGGG--A----TTCGACTGATGAACAAAAAATCTCGA 1372
| |||||||||||||| |||||||||| | || |||||||||||||||||||||||
Sbjct 1316 ATTGGGAAATCGGGAACCGGCCTAGGGTTAGGGATTTGACTGATGAACAAAAAATCTCGA 1375
Query 1373 ATCTCGACGAGGATCTAAGTCGGATCTTGGCTCATAAATCCCAGAGTGAAGCCACGCTTC 1432
|||||||| ||||||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct 1376 ATCTCGACTCTGATCTAAGTCGGATCTTGGCTCATAAATCTCAGAGTGAAGCCACTCTTC 1435
Query 1433 GTCCACCGAAGAATTGGGACGCGGTAACAACAACTGCAACGAACTTAAATTCGGCGACGA 1492
||||||||||||||||||| | || ||||| |||| | ||||| | |||||||||||
Sbjct 1436 GTCCACCGAAGAATTGGGATGATGTTACAAC---TGCAGCTAACTTGAGTTCGGCGACGA 1492
Query 1493 TGCAACCTCACCTGCAATCAAGGACGATGATACATAAACAGCCGTCGTGGCCTAGCCGGA 1552
||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1493 TGCTTCCTTACCTGCAATCAAGGACGATGATACATAAACAGCCGTCGTGGCCTAGCCGGA 1552
Query 1553 TCTCTATTACGCCGGGAAGTATGTTTCAGCAACCAATTgggggggAGGCGACGCTGAG-G 1611
||||||||||||||||||||||||| |||| |||| | ||| | || || | | |
Sbjct 1553 TCTCTATTACGCCGGGAAGTATGTTACAGCCACCACT-GGGAG--AGCCGG-GAAAAATG 1608
Query 1612 TACGAGAGCGCGAGTAATCTGTCTCTAGCAACGTTCGCTTCGCTACTGATCGAATTCGTC 1671
|||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 1609 TACGAGAGCGCGAGTAATCTTTCTCTAGCTACGTTCGCTTCGCTACTGATCGAATTCGTC 1668
Query 1672 GCGAGGCTTGAGAATCTCGTGAATGCGTATGATGAGCTCAGTGTC 1716
||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1669 GCGAGGCTTGAGAATCTCGTGAATGCGTACGATGAGCTCAGTGTC 1713
> AT1G18415.1 | Symbols: | other RNA | chr1:6343096-6345662 REVERSE
LENGTH=2189
Length=2189
Score = 516 bits (279), Expect = 3e-145
Identities = 378/424 (89%), Gaps = 14/424 (3%)
Strand=Plus/Minus
Query 1300 CTTCTCGTGAACGCCAAGAACTGGGAAATCGGGAATCGGCC------TAGGGATTCGACT 1353
|||||||||||||||||||| |||||||||||||| ||||| |||||||| ||||
Sbjct 423 CTTCTCGTGAACGCCAAGAATTGGGAAATCGGGAACCGGCCTAGGGTTAGGGATTTGACT 364
Query 1354 GATGAACAAAAAATCTCGAATCTCGACGAGGATCTAAGTCGGATCTTGGCTCATAAATCC 1413
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 363 GATGAACAAAAAATCTCGAATCTCGACTCTGATCTAAGTCGGATCTTGGCTCATAAATCT 304
Query 1414 CAGAGTGAAGCCACGCTTCGTCCACCGAAGAATTGGGACGCGGTAACAACAACTGCAACG 1473
|||||||||||||| ||||||||||||||||||||||| | || ||||||||| |
Sbjct 303 CAGAGTGAAGCCACTCTTCGTCCACCGAAGAATTGGGATGATGT---TACAACTGCAGCT 247
Query 1474 AACTTAAATTCGGCGACGATGCAACCTCACCTGCAATCAAGGACGATGATACATAAACAG 1533
||||| | |||||||||||||| ||| ||||||||||||||||||||||||||||||||
Sbjct 246 AACTTGAGTTCGGCGACGATGCTTCCTTACCTGCAATCAAGGACGATGATACATAAACAG 187
Query 1534 CCGTCGTGGCCTAGCCGGATCTCTATTACGCCGGGAAGTATGTTTCAGCAACCAATTggg 1593
|||||||||||||||||||||||||||||||||||||||||||| |||| |||| | |||
Sbjct 186 CCGTCGTGGCCTAGCCGGATCTCTATTACGCCGGGAAGTATGTTACAGCCACCACT-GGG 128
Query 1594 ggggAGGCGACGCTGAG-GTACGAGAGCGCGAGTAATCTGTCTCTAGCAACGTTCGCTTC 1652
| || || | | ||||||||||||||||||||| |||||||| |||||||||||
Sbjct 127 AG--AGCCGG-GAAAAATGTACGAGAGCGCGAGTAATCTTTCTCTAGCTACGTTCGCTTC 71
Query 1653 GCTACTGATCGAATTCGTCGCGAGGCTTGAGAATCTCGTGAATGCGTATGATGAGCTCAG 1712
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 70 GCTACTGATCGAATTCGTCGCGAGGCTTGAGAATCTCGTGAATGCGTACGATGAGCTCAG 11
Query 1713 TGTC 1716
||||
Sbjct 10 TGTC 7
Score = 466 bits (252), Expect = 3e-130
Identities = 273/283 (96%), Gaps = 2/283 (1%)
Strand=Plus/Minus
Query 545 TTGTAGT-AGCCTTTTTTGCGACTTATGCAAAGCTATATCCAACGATGAAGCCATATGAG 603
||||| | ||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 1177 TTGTA-TCAGCCTTTTTTGCGACTTATGCAAAGCTATATCCAACGATGAAGCCTTACGAG 1119
Query 604 TATGGATTCCGGGTGTTCTTGCTGACCTATTGCTACGTAATAGTGTCAGGATACAAAACA 663
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1118 TACGGATTCCGGGTGTTCTTGCTGACCTATTGCTACGTAATAGTGTCAGGATACAAAACA 1059
Query 664 GGGGAATTCATGGAAACAGCTGTTTCAAGGTTCCTTCTAATAGCTCTTGGTGCCTGTGTT 723
|||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||
Sbjct 1058 GGGGAATTCATGGAAACAGCTGTTTCAAGGTTCCTTCTGATAGCTCTTGGTGCCAGTGTT 999
Query 724 GGCCTCGTAGTGAACACTTGCATTTATCCCATATGGGCTGGGGAAGATCTCCATAACTTG 783
|||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 998 GGCCTCATAGTGAATACTTGCATTTATCCCATATGGGCTGGGGAAGATCTCCATAACTTG 939
Query 784 GTCGCCAAGAACTTTGTGAACGTAGCGACTTCTTTGGAAGGTT 826
||||||||||||||||||||||||||||||||| |||||||||
Sbjct 938 GTCGCCAAGAACTTTGTGAACGTAGCGACTTCTCTGGAAGGTT 896
Score = 459 bits (248), Expect = 5e-128
Identities = 336/375 (90%), Gaps = 19/375 (5%)
Strand=Plus/Minus
Query 183 CAGGTACTTCTCCGACAAGATCACTGGGGCTGTGAAGAAATCAAAAGATGTTTTGGTTAC 242
||| |||||||| ||||||||||| |||| ||||||||||| ||| ||||||||||||||
Sbjct 1622 CAGCTACTTCTCTGACAAGATCACGGGGGTTGTGAAGAAATTAAAGGATGTTTTGGTTAC 1563
Query 243 GGCATGGGAGATGGGAACAGCTGACCCGAGGAAGATCATATTCTCGGCGAAGATGGGTTT 302
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1562 GGCATGGGAGATGGGAACAGCTGACCCGAGGAAGATGATATTCTCGGCGAAGATGGGTTT 1503
Query 303 AGCTCTGACACTTACCTCTATCCTCATCTTCTTTAAGATCCCAGGATTAGAGCTCAGCAG 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1502 GGCTCTGACACTTACCTCTATCCTCATCTTCTTTAAGATCCCAGGATTAGAGCTCAGCGG 1443
Query 363 CCACTATCTCTGGGCAA-T--TCTTACAGTAGTTGTTATTTTCGAGTTCAGTATAGGAGC 419
|||||||||||| || | |||| | | ||||| |||| | | | || |||||
Sbjct 1442 CCACTATCTCTGA-CATGTGATCTT-C--TC-TTGTT-TTTT-G--T--A-TA--GGAGC 1397
Query 420 CACCTTTAGCAAAGGATGTAACCGGGGACTAGGAACATTGTCCGCTGGAGGATTGGCGCT 479
||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||
Sbjct 1396 CACCTTTAGCAAAGGATGTAACCGGGGACTAGGAACATTGTCCGCAGGAGGACTGGCGCT 1337
Query 480 TGGCATGGCTTGGATATCCGAGATGAGTGGAGACTGGGGAGA-GTTTCTTAATGCTGCTA 538
||||||| |||||||||| ||||||| |||| | |||| ||| |||| ||||||||||||
Sbjct 1336 TGGCATGTCTTGGATATCGGAGATGACTGGAAATTGGGCAGATGTTT-TTAATGCTGCTA 1278
Query 539 GCATCTTTGTAGTAG 553
|||||||||||||||
Sbjct 1277 GCATCTTTGTAGTAG 1263
Score = 387 bits (209), Expect = 3e-106
Identities = 276/307 (90%), Gaps = 10/307 (3%)
Strand=Plus/Minus
Query 815 CTTTG-GAAGGTTGTGTGAATGGATATCTCGAGTGCGTAGCATATGATACAATCCCATCT 873
||||| | |||||||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 817 CTTTGTGCAGGTTGTGTGAACGGATATCTTGAGTGCGTAGCATATGATACAATCCCATCT 758
Query 874 AGGATTCTGGTCTATGAAGCTGTCGCGGAAGATCCAGTGTACAGTGGTTACAGATCAGCC 933
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 757 AGGATTCTGGTCTATGAAGCTGTCGCGGAAGATCCAGTGTACAGTGGTTACAGATCAGCC 698
Query 934 GTTC-A-ATC---TACAAG-CCAAGAAGACACTCT---GATGGGTTTTGCTTCATGGGAG 984
|||| | ||| | | | | | | | | |||| ||||||| |||||||||
Sbjct 697 GTTCAATATCTTTTTCTTGTTGTTGGTGTGATTGTGAAGATGAGTTTTGCATCATGGGAG 638
Query 985 CCACCACACGGACCGTACAAATCCTTTAGATATCCATGGGCAATGTATGTGAAAGTAGGT 1044
|||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||
Sbjct 637 CCACCACACGGACCGTACAAATCCTTTAGATACCCATGGGCACTGTATGTGAAAGTAGGT 578
Query 1045 GGTGCATTGAGGCATTGTGCTATCATGGTCATGGCGTTACATGGCTGCATTCTCTCAGAG 1104
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 577 GGTGCATTGAGGCATTGTGCTATCATGGTCATGGCGTTACATGGCTGCATTCTCTCAGAG 518
Query 1105 ATTCAGG 1111
|| ||||
Sbjct 517 ATCCAGG 511
Score = 298 bits (161), Expect = 1e-79
Identities = 179/187 (96%), Gaps = 3/187 (2%)
Strand=Plus/Minus
Query 1 ATGGCGGCACCAAAGCTGGAATCTTTCAGGCGGGGTAGCATGTTCGACGGATCTTTCAGG 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1955 ATGGCGGCACCAAAGCTGGAATCTTTCAGGCGGGGTAGCATGTTCGACGGATCTTTCAGG 1896
Query 61 CGAGGTAGTATGTTCGATGGTTCGTTTAGACAAAGCATGAGAGAGAGGCTTATCCCACAA 120
||||||||||||||||||||||||||| |||||||||||||||| |||||||||| |||
Sbjct 1895 CGAGGTAGTATGTTCGATGGTTCGTTTCGACAAAGCATGAGAGATAGGCTTATCCTACA- 1837
Query 121 CAGAGCAGAAGCTATTCCAATGTCAACGACGATGACCAAACTTCCGTCCGTTGCTGCTCC 180
||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1836 --GAGCAGAGGCTATTCCAATGTCAACGACGATGACAAAACTTCCGTCCGTTGCTGCTCC 1779
Query 181 TACAGGT 187
|||||||
Sbjct 1778 TACAGGT 1772
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 85441327590
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5