BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg911666
Length=747
Score E
Sequences producing significant alignments: (Bits) Value
AT1G18510.1 | Symbols: TET16 | tetraspanin 16 | chr1:6373295-63... 1098 0.0
> AT1G18510.1 | Symbols: TET16 | tetraspanin 16 | chr1:6373295-6374090
FORWARD LENGTH=717
Length=717
Score = 1098 bits (594), Expect = 0.0
Identities = 677/718 (94%), Gaps = 2/718 (0%)
Strand=Plus/Plus
Query 31 ATGGCGACCATAATCCTCATTTGCATAGGCTTAACCATGACGGGAACAGGTTTATATTAC 90
||||||||||||||||| || |||||||||||||| ||||||||||||||||||||||||
Sbjct 1 ATGGCGACCATAATCCTTATATGCATAGGCTTAACAATGACGGGAACAGGTTTATATTAC 60
Query 91 AGGAAAACAGTCTC-ACAATGTATCCGAGAAACGGATGGCAGTTTCGTTGTCCTTGGTTT 149
|| ||||||||||| | ||||||||||||||||||||||||||||||| ||| |||||||
Sbjct 61 AGAAAAACAGTCTCGA-AATGTATCCGAGAAACGGATGGCAGTTTCGTCGTCATTGGTTT 119
Query 150 GCTCTTGCTGGTGATTCCTCAGTTTGCTCTTTACGCAATCTGTTGTCGCTCCAAACGTAT 209
||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||
Sbjct 120 GCTCTTGCTGGTGATTCCTCAGTTTGCTCTTTACGCAATCTGTTGTCACTCAAAACGTAT 179
Query 210 GTTCACAATTTACATATATGCAATGATATTCGTCTGCGTTGTCCTTGGTGGCTATTCTTT 269
||||||||| ||||| ||||||||||||||||| || |||||||||||||||| |||||
Sbjct 180 GTTCACAATCTACATCTATGCAATGATATTCGTAAGCATTGTCCTTGGTGGCTACTCTTT 239
Query 270 AAAGTGTTTCATCTACAACACAACCTTTGGAATCGCCAAGAACCCTGCTGAGGAAAAGCG 329
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 240 AAAGTGTTTCATCTACAACACAACCTTTGGAATCGCCAAGAACCCGGCTGAGGAAAAGCG 299
Query 330 AACCGCCAAGCAACTGGTTGGCCGGCTAGTCCCTGAAAGTAAACTTGCAAGAGTCACCGA 389
||||||||||||| |||| ||| ||||||||||||||||||||||||||| |||||| ||
Sbjct 300 AACCGCCAAGCAATTGGTAGGCAGGCTAGTCCCTGAAAGTAAACTTGCAAAAGTCACGGA 359
Query 390 CTGTATCATTTATAACCATGATTGTAACTTCAATGCCAGCCAAAACAGCAATGTTTGGAG 449
|| |||||| |||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 360 GTGCATCATTCATAACCATGACTGTAACTTCAATGCCAGCCAAAACAGCAATGTTTGGAG 419
Query 450 GTATTGCTGCGCGCAACCGAGAGGATGTGGAGTGACGACAATGTTCGGGCAACCAGGAGA 509
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 420 GTATTGCTGCGCGCAACCAAGAGGATGTGGAGTGACGACAATGTTCGGGCAACCAGGAGA 479
Query 510 ATGGAGTTGGAAACATCAACATGTAGAGAACCATGTTCCTGAAGAATGTTCTTACGAATA 569
||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct 480 ATGGAGTTGGAAACATCAACACGTAGAGAACCATGTTCCGGAAGAATGTTCTTACGAATA 539
Query 570 CTGTCTTAGTTGCAGAGGTTGCCAGCTGAGCATCTTAAAAGCCATTGTTGAACAATGGAA 629
|||||| |||||||||||||||||| ||||||||||||||||||||||| | ||||||||
Sbjct 540 CTGTCTCAGTTGCAGAGGTTGCCAGATGAGCATCTTAAAAGCCATTGTTCATCAATGGAA 599
Query 630 ATATCTCTCCATGTTCTCTTATCCTTCCCTCTTTCTCGTTTGTCTCAGCCTCGCCATTGC 689
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 600 ATATCTCTCCATGTTCTCTTATCCTGCCCTCTTTCTCGTTTGTCTCAGCCTCGCCATTTC 659
Query 690 CAGGTCCATTAAAGACACTTTTGATGAACCTGATGATTATAGAGGCTATTATACTTGA 747
||||||||||| || ||||| |||||||||||||||||||| ||||||||| |||||
Sbjct 660 CAGGTCCATTATGGATACTTTCGATGAACCTGATGATTATAGGGGCTATTATTCTTGA 717
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36269054134
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5