BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg911676
Length=1353
Score E
Sequences producing significant alignments: (Bits) Value
AT1G18610.1 | Symbols: | Galactose oxidase/kelch repeat superf... 1893 0.0
AT1G74150.1 | Symbols: | Galactose oxidase/kelch repeat superf... 171 2e-41
> AT1G18610.1 | Symbols: | Galactose oxidase/kelch repeat superfamily
protein | chr1:6405645-6409297 FORWARD LENGTH=2150
Length=2150
Score = 1893 bits (1025), Expect = 0.0
Identities = 1087/1118 (97%), Gaps = 0/1118 (0%)
Strand=Plus/Plus
Query 232 GCAAAGCAGATATGGACTCAGCCAATGATCAATGGCACACCTCCTCCTCCAAGGGACAGT 291
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 315 GCAAAGCAGATATGGACTCAGCCAATGATCAATGGCACACCTCCTCCTCCCAGGGACAGT 374
Query 292 CACAGCTGTACAACAGTCGGTGACAATCTTTTTGTGTTTGGTGGTACTGATGGAGTTAAC 351
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 375 CACAGCTGTACAACAGTCGGCGACAATCTTTTTGTGTTTGGTGGTACTGATGGAGTTAAC 434
Query 352 CCTCTCAAGGATTTGTATATTTTAGATACTTCTTCACATACTTGGAAATGTCCGAGTGTT 411
||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 435 CCTCTTAAGGATTTGTATATTCTAGATACTTCTTCACATACTTGGAAATGTCCGAGTGTT 494
Query 412 AGGGGAGAGGGACCTGAGGCAAGAGAAGGTCATAGCGCCACGCTGGTTGGTAAAAGGCTG 471
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 495 AGGGGAGAGGGACCTGAGGCAAGAGAAGGTCATAGCGCCACACTGGTTGGTAAAAGGCTG 554
Query 472 TTTGTCTTTGGTGGCTGTGGGAAATCTTCTGATATTAATGACGAAATCTATTATAATGAC 531
||||||||||||||||||||||||||||||| ||||||||| ||||||||||| ||||||
Sbjct 555 TTTGTCTTTGGTGGCTGTGGGAAATCTTCTGGTATTAATGAAGAAATCTATTACAATGAC 614
Query 532 GTTTACATATTTAATACAGAGACTTTTGTGTGGAAACGGGCTGTTACAATTGGAAATCCT 591
|||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 615 GTTTACATATTTAATACAGAAACTTTTGTGTGGAAACGGGCTGTTACAATTGGGAATCCT 674
Query 592 CCATCTGCGCGGGATAGCCACTCTTGCTCATCGTGGAAGAACAAACTTGTTGTTATAGGT 651
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 675 CCATCTGCGCGGGATAGCCATTCTTGCTCATCGTGGAAGAACAAACTTGTTGTTATAGGT 734
Query 652 GGCGAAGATGGACATGACTACTATCTGTCCGATGTTCATATCCTTGATACAGATACACTC 711
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 735 GGCGAAGATGGACATGACTACTATCTGTCCGATGTTCATATCCTTGATACAGATACACTT 794
Query 712 ATATGGAAAGAGCTGAATACTTCAGGGCAGTTGTTGACACCTCGAGCTGGTCATGTTACT 771
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 795 ATATGGAAAGAGTTGAATACTTCAGGGCAGTTGTTGACACCTCGAGCTGGTCATGTTACT 854
Query 772 GTTTCACTTGGGAGGAACATTTTTGTGTTTGGAGGGTTTACGGATGCTCAGAATCTTTAC 831
|||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||
Sbjct 855 GTTTCACTTGGGAGGAACTTTTTTGTTTTTGGAGGGTTTACGGATGCTCAGAATCTTTAC 914
Query 832 GATGATCTCTATGTGCTTGATGTCGATACGTGCGTATGGTCAAAGGTTCTCACCATGGGA 891
|||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||
Sbjct 915 GATGATCTCTATGTGCTTGATGTCGATACGTGTATATGGTCCAAGGTTCTCACCATGGGA 974
Query 892 GAAGGACCATCTGCTAGGTTCTCTTCTGCAGGGGCTTGTCTAGATCCTCACAAAGCTGGT 951
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 975 GAAGGACCATCTGCTAGGTTCTCTTCTGCAGGGGCTTGTCTAGATCCTCACAAAGCTGGT 1034
Query 952 TTTCTTGTCATTGTTGGTGGCTGCAATAAGAATCTCGAGGCATTGGATGACATGTTCTAC 1011
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1035 TTTCTTGTCATTGTTGGTGGCTGCAATAAGAATCTCGAGGCGTTGGATGACATGTTCTAC 1094
Query 1012 TTGCACACAGGTCTTGGATACGATGCAAGATTTGATCAAAATGTAGGGAGGTTGTCTCTA 1071
|| || ||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1095 TTACAGACAGGTCTTGGATACGATGCAAGATTTGATCAAAATGTAGGGATGTTGTCTCTA 1154
Query 1072 AAGAAGCAATTGAAGATAAAATGCCAAGAACAAAGTCATGCAAGTTCCTTGTACGATAAA 1131
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1155 AAGAAGCAATTGAAGATAAAATGCCAAGAACAAAGTCATGCAAGTTCCTTGTACGATAAA 1214
Query 1132 TCACTTGTCAGAATCAATATGGATCATCAAGGAAGAGGAAATTTTGGTTTGAACACTGGC 1191
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1215 TCACTTGTCAGAATCAATATGGATCATCAAGGAAGAGGAAATTTTGGTTTGAACACTTGC 1274
Query 1192 CAATTTAATGAAGGAAAGATGATGTTTCAAGCCCGGATAACCGAGAGTTACCCTGTTGGT 1251
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1275 CAATTTAATGAAGGAAAGATGATGTTTCAAGCCCGGATAACCGAGAGTTACCCGGTTGGT 1334
Query 1252 TACACTATGGAAACAATGATAGACGGAAAAGTGCTTCGTGGTGTTTTGTTCTCAAACAAG 1311
||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 1335 TACACTATGGAAACAATGATAGATGGAAAAGTGCTTCGTGGTGTTTTGTTTTCAAACAAG 1394
Query 1312 CGCAGCTCCGTTCTGGCGACCGATCAAAGCTTTAGTAG 1349
|||||||| ||||| || | |||||||||||||||||
Sbjct 1395 CGCAGCTCTATTCTGCCGGCAGATCAAAGCTTTAGTAG 1432
Score = 318 bits (172), Expect = 7e-86
Identities = 178/181 (98%), Gaps = 0/181 (0%)
Strand=Plus/Plus
Query 1 ATGAGGTGGGAAAGGGTCCGACAACAACAGCAACAAGTGGGTCTCGGTGACTCTTCTTCC 60
||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||
Sbjct 135 ATGAGGTGGGAAAGGGTCCGACAACTACAGCAACAAGTGGGTCTCGGTGAGTCTTCTTCC 194
Query 61 GGGCCCGGTAAGAGGTGGGGACACACTTGTAACGCCATTAAAGGAGGTAGCTTTCTCTAT 120
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 195 GGGCCCGGTAAGAGGTGGGGTCACACTTGTAACGCCATTAAAGGAGGTAGCTTTCTCTAT 254
Query 121 GTTTTCGGTGGCTATGGCAGAGATAATTGCCAAACCAATCAAGTCCATGTTTTCGACGCT 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 255 GTTTTCGGTGGCTATGGCAGAGATAATTGCCAAACCAATCAAGTCCATGTTTTCGACGCT 314
Query 181 G 181
|
Sbjct 315 G 315
> AT1G74150.1 | Symbols: | Galactose oxidase/kelch repeat superfamily
protein | chr1:27880528-27883626 FORWARD LENGTH=1710
Length=1710
Score = 171 bits (92), Expect = 2e-41
Identities = 135/155 (87%), Gaps = 5/155 (3%)
Strand=Plus/Plus
Query 31 CAACAAGTGGGTCTCGGTGA--C-TCTTCTTCCGGGCCCGGTAAGAGGTGGGGACACACT 87
|||||||||||||||||||| | ||||||| ||| ||||| ||||| ||||||||||||
Sbjct 19 CAACAAGTGGGTCTCGGTGATTCTTCTTCTTTCGGCCCCGGAAAGAGATGGGGACACACT 78
Query 88 TGTAACGCCATTAAAGGAGGTAGCTTTCTCTATGT-TTTCGGTGGCTATGGCAGAGATAA 146
||||||||||||||||| || || |||||||| || ||| ||||||| ||||||||| ||
Sbjct 79 TGTAACGCCATTAAAGGCGGCAGATTTCTCTACGTATTT-GGTGGCTTTGGCAGAGACAA 137
Query 147 TTGCCAAACCAATCAAGTCCATGTTTTCGACGCTG 181
|||| ||| |||||||| ||||| ||||||||||
Sbjct 138 TTGCTTAACAAATCAAGTTCATGTCTTCGACGCTG 172
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66616123215
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5