BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg911678

Length=477
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G18630.1 | Symbols: GR-RBP6 | glycine-rich RNA-binding prote...   745    0.0  


> AT1G18630.1 | Symbols: GR-RBP6 | glycine-rich RNA-binding protein 
6 | chr1:6414725-6416459 FORWARD LENGTH=751
Length=751

 Score =  745 bits (403),  Expect = 0.0
 Identities = 455/478 (95%), Gaps = 11/478 (2%)
 Strand=Plus/Plus

Query  1    ATGCATTACATGGGTTTGTTTAGTAGGGCTGGAAACATATTTAGGCAGCCTAGAGCGTTA  60
            |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| 
Sbjct  108  ATGCATTACATGGGTTTGTTTAGTAGAGCTGGAAACATATTTAGGCAGCCTAGAGCGTTG  167

Query  61   CAGGCCTCAAACGCTATGTTACAGGGCAATCTTTCATTAACTCCATCCAAACTCTTTGTT  120
            ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct  168  CAGGCCTCAAACGCTATGTTACAGGGCAATCTTTCATTAACTCCATCCAAAATCTTTGTT  227

Query  121  GGAGGTCTCTCACCAGCTACTGATGTGGAGCTCTTGAAAGAAGCTTTTGGCAGTTTTGGA  180
            ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct  228  GGAGGTCTCTCACCATCTACTGATGTGGAGCTCTTGAAAGAAGCTTTTGGCAGTTTTGGA  287

Query  181  AAAATTGTTGATGCGGTAGTGGTTTTGGACCGTGAAAGTGGTCTATCAAGGGGCTTTGGT  240
            |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct  288  AAAATTGTTGATGCGGTAGTGGTTTTGGACCGTGAAAGTGGTTTATCAAGGGGCTTTGGT  347

Query  241  TTCGTAACATATGATTCGATCGAAGATGCTAATAACGCAATGCAATG-TATGCATAATAA  299
            ||||||||||||||||||||||||| ||||||||||||||||||| | |||||| |||||
Sbjct  348  TTCGTAACATATGATTCGATCGAAGTTGCTAATAACGCAATGCAA-GCTATGCAAAATAA  406

Query  300  GGAGCTTGATGGGCGAATAATTGGAGTGAATCCAGCTGGTTCAGGAggtggtggtggcag  359
            |||||||||||||||||||||||||||| ||||||||| ||||||||||||||| ||  |
Sbjct  407  GGAGCTTGATGGGCGAATAATTGGAGTGCATCCAGCTGATTCAGGAGGTGGTGG-GG--G  463

Query  360  tgggggtgggggtggttttgcaagaaggggaggttatggtggtggtcgtggtggatttgg  419
            |   |||   ||||||||||||||||||||||||||||||||||||||||| |||| || 
Sbjct  464  T---GGT---GGTGGTTTTGCAAGAAGGGGAGGTTATGGTGGTGGTCGTGGGGGATATGC  517

Query  420  tcgtggtggatttggtcgcggtggatttggtggtggtggCTATGGCTTTGTTCGTTAA  477
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  518  TCGTGGTGGATTTGGTCGCGGTGGATTTGGTGGTGGTGGCTATGGCTTTGTTCGTTAA  575



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 22705834444


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5