BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg911684

Length=540
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G18680.1 | Symbols:  | HNH endonuclease domain-containing pr...   863    0.0  


> AT1G18680.1 | Symbols:  | HNH endonuclease domain-containing 
protein | chr1:6431938-6433464 REVERSE LENGTH=786
Length=786

 Score =  863 bits (467),  Expect = 0.0
 Identities = 503/521 (97%), Gaps = 0/521 (0%)
 Strand=Plus/Plus

Query  20   CCGCCGCCGCCGTTCCTCCTCCGTCTCCACCTTCATCGCCGTCACGCTCCAATGTAAAAT  79
            ||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||
Sbjct  71   CCGCCGCCGCCGTTCCTCCTCCGTCGCCACCTTCATCGCCGTCACGTTCCAATGTAAAAT  130

Query  80   CTAAGGGAGAAGAGAGACCTCGTTTCTTCGATGGAAAGGCGAAGAACAAGTGTTGGGCTA  139
            |||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct  131  CTAACGGAGAAGAGAGACCTCGTTTCTTCGATGGAAAGGCGAAGAACAAGTGCTGGGCTA  190

Query  140  ATGCTGACATCGTACCTGGTCGACATCCCGAGAGGTGGCGTAAAGATGCCGCCGGTAACA  199
            |||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct  191  ATGCTGACATCGTACCTGGTCGACATCCCGAGAGGTGGCGTAAAGACGTCGCCGGTAACA  250

Query  200  TGGTCTGCAAACGCTTCGGAAATTGCAATGGTTGTCTCTGTTTCGAGTATGATCACATTG  259
            | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  251  TAGTCTGCAAACGCTTCGGAAATTGCAATGGTTGTCTCTGTTTCGAGTATGATCACATTG  310

Query  260  TTCCTTACTCCAAAGGTGGAGAGTCAATAGCTGAGAATTGTCAGATTCTTCAAACTAGAG  319
            ||||||| ||||||||||||||||| ||||| ||||||||||||||||||||||| ||||
Sbjct  311  TTCCTTATTCCAAAGGTGGAGAGTCGATAGCGGAGAATTGTCAGATTCTTCAAACAAGAG  370

Query  320  TTAACAGATTCAAATCAGCTCAAGAAAATGTGGATGCCACCACTCTTAAGAGCTATTCTT  379
            ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct  371  TTAACAGATTCAAATCAGCTCAAGAAAATGTTGATGCCACCACTCTTAAGAGCTATTCTT  430

Query  380  GTGGTCTGCAATTTACGGACAAGGAGCTAGATATTATCGAGATGGCCGTGTATGGAGATG  439
            |||||||||||||||||||||||||| ||||| ||||||||||||| || |||||||| |
Sbjct  431  GTGGTCTGCAATTTACGGACAAGGAGTTAGATGTTATCGAGATGGCGGTTTATGGAGACG  490

Query  440  TGTTACGACCTGGAAAAGAATGTCGCTGCAAAACCGTAGCTGAGCTGCTTGGTCAGTCCA  499
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  491  TGTTACGACCTGGAAAAGAATGTCGCTGCAAAACCGTAGCTGAGCTGCTTGGTCAGTCCA  550

Query  500  AGTCCAAAGATGGTAAAGCCGCATGTGAGTTACCATCATAG  540
            ||||||||||||||||||||||||| |||||||||||||||
Sbjct  551  AGTCCAAAGATGGTAAAGCCGCATGCGAGTTACCATCATAG  591



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 25870585705


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5