BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg911724
Length=741
Score E
Sequences producing significant alignments: (Bits) Value
AT4G22280.1 | Symbols: | F-box/RNI-like superfamily protein | ... 316 1e-85
> AT4G22280.1 | Symbols: | F-box/RNI-like superfamily protein
| chr4:11775969-11778123 REVERSE LENGTH=1479
Length=1479
Score = 316 bits (171), Expect = 1e-85
Identities = 383/480 (80%), Gaps = 35/480 (7%)
Strand=Plus/Plus
Query 2 TGGTTGAGCTGAAACTAGCAACAGGGAGATTCGAGGCTAT-GTTACCTGATGAGAATGTT 60
|||||||||||||||| || | || | |||| | || || ||| |||||| |||||
Sbjct 526 TGGTTGAGCTGAAACTCGC-A-AGAG-GATTTTATGCCATGGTT-CCTGAT---TATGTT 578
Query 61 TCTCTTCCATCACTTAAGACTCTCTTTCTTGAG--CGGATTTGTTTCTACAATACTGATT 118
||||||||||| |||||||||||||||||| || | ||||| |||| || | ||||
Sbjct 579 TCTCTTCCATCGCTTAAGACTCTCTTTCTT-AGTTC-CATTTGGTTCTGTAACAGGGATT 636
Query 119 TTTGTGTTTTGGGAAAGCTTCTTTTTGCTT-CTCCTTTGCTTGAGGAATTTACCATTCGT 177
||| |||||||| |||||||| ||||| | ||| ||||||||||||| |||||| |
Sbjct 637 GTTGCCCTTTGGGAAGGCTTCTTTCTGCTTGC-CCTGTGCTTGAGGAATTAACCATT-AT 694
Query 178 TGTGTTGGGAGCTGGC-A-ATATGGGAGTTGCTGCCGCAATGTCTCCTCTTCCACACTAA 235
|| | |||| |||||| | |||| || || || |||| ||||||||||| || || |
Sbjct 695 TG-G-TGGGTGCTGGCAACATAT-AGAATT-TTGTCGCACCGTCTCCTCTTCGACCCTTA 750
Query 236 AGAAACTTACTATCGTGTCTACTCCTCAGCT-TGATTTTTGGGACATGC-TTTTTGATAC 293
||||||||||||| |||| || ||| || ||| | ||||| ||| | | | |||||
Sbjct 751 AGAAACTTACTATTACGTCTTCTTTTCA-CTATGAATATTGGGGCAT-CACTATCGATAC 808
Query 294 TCCGAATCTTGCCTACTTAGAATACACTGGTTTAGTTCCAAGAGAATATCCAACTGTGAA 353
|||| ||||||||||||||||||| ||| | ||||||||||| | | ||| ||||||
Sbjct 809 ACCGAGTCTTGCCTACTTAGAATACTCTGATCTAGTTCCAAGACACTTTCCGTTTGTGAA 868
Query 354 TCTTGAATCCCTTGTCGAAGCTAAGCTTGATCTTAGTTTT-TGT-CTTGGTATCAGCAAT 411
||||||||||||||||||||||||||| | |||| | | | ||| || | || ||||||
Sbjct 869 TCTTGAATCCCTTGTCGAAGCTAAGCTCGCTCTT-GATCTATGTTCT-G--AT-AGCAAT 923
Query 412 CCAACAAATCTGATTAAGGGGTTAACGAA-TGTTGAGGTCTTAGAGTTATCATCTG-TTA 469
||||||||||||||||||||||||| ||| |||||||||||| ||||||||||||| |||
Sbjct 924 CCAACAAATCTGATTAAGGGGTTAA-GAAATGTTGAGGTCTTGGAGTTATCATCTGGTTA 982
Score = 303 bits (164), Expect = 1e-81
Identities = 221/247 (89%), Gaps = 9/247 (4%)
Strand=Plus/Plus
Query 475 TCAGAGGGTCCATTG-CACGCTGATGA-ATGTGAAGGAGAATATGGATTGTCATGTCCTG 532
||| ||||||||||| | ||||||| | || |||| ||||||||||||||||||||||||
Sbjct 1135 TCA-AGGGTCCATTGTC-CGCTGAT-AGATATGAACGAGAATATGGATTGTCATGTCCTG 1191
Query 533 TGAAAGTATTGAAGATAACTGAGTATGGAGGAAAA-AGTGGAGAGCTAAAGCGAATGAAA 591
||||||||||| ||||||||||||||||||||||| | || ||||||| ||| |||| ||
Sbjct 1192 TGAAAGTATTGGAGATAACTGAGTATGGAGGAAAATA-TGAAGAGCTAGAGCAAATGGAA 1250
Query 592 CACTTACT-AGAGAAGCTGTCATGTCTTGAGCTTGTCAAAGTTCGTGCTTGTGCAATTAA 650
|| || || | |||| ||| |||||||||||||||||||||||||||||| |||||| ||
Sbjct 1251 CATTT-CTTAAAGAAACTGCCATGTCTTGAGCTTGTCAAAGTTCGTGCTTCTGCAATAAA 1309
Query 651 CGACAAAGAAAAGTCTCGAATCACCAAAGATCTGCTAATGGTTCCTAGATCGTTCAATTG 710
|||||| ||||||||||| |||||||||||||||||||||||||||||||||| ||||||
Sbjct 1310 CGACAAGGAAAAGTCTCGTATCACCAAAGATCTGCTAATGGTTCCTAGATCGTCCAATTG 1369
Query 711 CAACATC 717
||| |||
Sbjct 1370 CAATATC 1376
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35967649252
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5