BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg911737
Length=663
Score E
Sequences producing significant alignments: (Bits) Value
AT1G19200.1 | Symbols: | Protein of unknown function (DUF581) ... 765 0.0
AT1G74940.1 | Symbols: | Protein of unknown function (DUF581) ... 135 4e-31
> AT1G19200.1 | Symbols: | Protein of unknown function (DUF581)
| chr1:6625020-6625856 REVERSE LENGTH=732
Length=732
Score = 765 bits (414), Expect = 0.0
Identities = 580/657 (88%), Gaps = 24/657 (4%)
Strand=Plus/Plus
Query 22 ATGGTGGTTCCAGG-AATAAACTCGATTATTACGTCGGCA-AATTTCACGGCTAGTCGAA 79
|||||||||||||| || |||||| | |||| || ||| | ||||||||||||||| ||
Sbjct 1 ATGGTGGTTCCAGGTAA-AAACTCCACTATTTCGCCGG-ATTATTTCACGGCTAGTCAAA 58
Query 80 CAAGTCCATTAGATATGA--AATTTCCC-TCGCCTGGAAGTTCGAAGAGGTACGA-AGAC 135
||||||| |||||||||| || ||||| |||||||||||||||||||||||||| | |
Sbjct 59 CAAGTCCTTTAGATATGATGAAATTCCCGTCGCCTGGAAGTTCGAAGAGGTACGATA-AT 117
Query 136 GGCGGTGGAATTGGTTTAGGTATCGTCGCTGCGCTTGAGAAATCCGGCATCGGGATCAAT 195
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 118 GGCGGTGGAATTGGTTTAGGTATCGTCGCTGCGCTTGAGAAATCCAGCATCGGGATCAAT 177
Query 196 CCGGTTTGCTATCCCGCAACCGGTT-CAAACGGATCCGACCCGGTTCGCTA-TCGTAGGA 253
||||||||| || ||| |||||| |||| |||| |||| || ||| || || | ||
Sbjct 178 CCGGTTTGCCATACCGGTGCCGGTTCCAAA-GGATTTGACCTGGCTCGATATTC-CAAGA 235
Query 254 GAGTCCAATTGGCGGCGGATATTGATCTATCTGACTCTGAGGAATACACTTGCGTCACGA 313
|| ||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 236 GATTCCAATTCGCGGCGGGGATTGATCTATCTGACTCTGAGGAATACACTTGCGTCACGA 295
Query 314 CTCGTGATGGCCGGACCAAAGTCTATTACAACGAAGAAGAATTTGAATTTGGTCAGAATC 373
|||||||||||| |||||||||||||||||| |||||||| |||||||||||||| ||||
Sbjct 296 CTCGTGATGGCCTGACCAAAGTCTATTACAAGGAAGAAGAGTTTGAATTTGGTCATAATC 355
Query 374 TATCGACCGGTGATCAGAGATTGAAAAAATGGATAGAAATCGCCGAGGAATCACCGGTGA 433
||| || |||||||||||||| || |||| |||||||||||||||||| ||||||| ||
Sbjct 356 TATTGAACGGTGATCAGAGATGGAGAAAACCGATAGAAATCGCCGAGGAGTCACCGGCGA 415
Query 434 AGAAGA-GAGAGGTATTGAGAGATTCTCCAGATTTTCTGACTTCATGTTGTTTGTGTAAG 492
|| ||| | | |||||||||||||| |||||||||||| ||||| ||||| |||||||||
Sbjct 416 AGGAGAGGCG-GGTATTGAGAGATTGTCCAGATTTTCTAACTTCTTGTTGCTTGTGTAAG 474
Query 493 AAGAAACTTCAAGGCAAAGACATTTACATGTACAAAGGAGATGAAGGATTTTGTAGTAAA 552
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 475 AAGAAACTTCAAGGCAAAGACATTTACATGTACAAAGGAGATGAAGGATTTTGTAGTAAA 534
Query 553 GAGTGTAGATCGTTGAAAATAATGGATGATAGTTTAAACGAGCAACATAAATTGAGAAAC 612
||||||||||||||||| |||||||| ||||||||||| |||||||||||||||| ||
Sbjct 535 GAGTGTAGATCGTTGAAGATAATGGAGGATAGTTTAAAAGAGCAACATAAATTGACAAG- 593
Query 613 TCTCCATG--CGT--C-GGAGAAGAGATTGCCTCCCCCGGAATATTC-TTGATATGA 663
| | | | | | | |||||||||||||||||||||||||||||| || ||||||
Sbjct 594 TGTTGAGGTTC-TAACCGGAGAAGAGATTGCCTCCCCCGGAATATTCCTT-ATATGA 648
> AT1G74940.1 | Symbols: | Protein of unknown function (DUF581)
| chr1:28146059-28147378 FORWARD LENGTH=1207
Length=1207
Score = 135 bits (73), Expect = 4e-31
Identities = 242/320 (76%), Gaps = 26/320 (8%)
Strand=Plus/Plus
Query 269 CGGATATTGATCTATCTGACTCTGAGGAATACACTTGCGTCACGA-CTCGTGA-TGGCCG 326
|||| |||||||| || || |||||||||||||| || |||| | | | ||||
Sbjct 488 CGGAGATTGATCTGTCGGA---TGAGGAATACACTTATGTTACGAGC-CCAAACGGGCC- 542
Query 327 GACCAAAGTCTATTACAACGAAGAAGAATTTGAATTTGGTCAGAATCTATCGACCGGTGA 386
||||||||| ||||||||||| || | |||||| || ||| ||| || || | |
Sbjct 543 GACCAAAGTGTATTACAACGACGACGGGTTTGAA-TT-GTCTGAA--AAT-GA----TTA 593
Query 387 TCAGAGA-TTGAAAAAATGGATAGAAATCGCCGAGGAATCACCGGTGA-AG-AAGAGAGA 443
|| |||| || | ||| ||| | | || ||| ||| ||||||| | | |||| |||
Sbjct 594 TCGGAGAGTT-CATAAACCGATGGTTACCGTCGATGAACCACCGGTTATTGAAAGACAGA 652
Query 444 GGTATTGAGAGATTCTCCAGATTTTCTGACTTCATGTTGTTTGTGTAAGAAGAAACTTCA 503
|| || || | | | |||| ||||||| ||| ||||| ||||||||||||||||||||
Sbjct 653 -GTGTT-AGGGGTCCAACAGAGTTTCTGAGTTCGTGTTGCTTGTGTAAGAAGAAACTTCA 710
Query 504 AGGCAAAGACATTTACATGTACAAAGGAGATGAAGG-ATTTTGTAGTAAAGAGTGTAGAT 562
|||||||||||| ||||||||||||||||| || || |||||||||| || || ||||
Sbjct 711 AGGCAAAGACATATACATGTACAAAGGAGA-GATGGGATTTTGTAGTGCCGAATGCAGAT 769
Query 563 C-GTTGAAAATAATGGATGA 581
| || | |||||||| ||||
Sbjct 770 CAGT-GCAAATAATGAATGA 788
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32049385786
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5